Lai Xin, Nikolov Svetoslav, Wolkenhauer Olaf, Vera Julio
Systems Biology and Bioinformatics Group, Department of Computer Science, University of Rostock, 18051 Rostock, Germany.
Comput Biol Chem. 2009 Aug;33(4):312-24. doi: 10.1016/j.compbiolchem.2009.07.003. Epub 2009 Jul 9.
We develop a multi-level model, using ordinary differential equations, based on quantitative experimental data, accounting for murine erythropoiesis. At the sub-cellular level, the model includes a description of the regulation of red blood cell differentiation through Epo-stimulated JAK2-STAT5 signalling activation, while at the cell population level the model describes the dynamics of (STAT5-mediated) red blood cell differentiation from their progenitors. Furthermore, the model includes equations depicting the hypoxia-mediated regulation of hormone erythropoietin blood levels. Take all together, the model constitutes a multi-level, feedback loop-regulated biological system, involving processes in different organs and at different organisational levels. We use our model to investigate the effect of deregulation in the proteins involved in the JAK2-STAT5 signalling pathway in red blood cells. Our analysis results suggest that down-regulation in any of the three signalling system components affects the hematocrit level in an individual considerably. In addition, our analysis predicts that exogenous Epo injection (an already existing treatment for several blood diseases) may compensate the effects of single down-regulation of Epo hormone level, STAT5 or EpoR/JAK2 expression level, and that it may be insufficient to counterpart a combined down-regulation of all the elements in the JAK2-STAT5 signalling cascade.
我们基于定量实验数据,利用常微分方程构建了一个描述小鼠红细胞生成的多层次模型。在亚细胞水平,该模型描述了通过促红细胞生成素(Epo)刺激的JAK2 - STAT5信号激活对红细胞分化的调控;在细胞群体水平,模型描述了(STAT5介导的)红细胞从其祖细胞开始分化的动力学过程。此外,该模型还包含描述缺氧介导的激素促红细胞生成素血液水平调控的方程。总体而言,该模型构成了一个多层次、反馈回路调节的生物系统,涉及不同器官和不同组织水平的过程。我们使用该模型研究红细胞中JAK2 - STAT5信号通路相关蛋白失调的影响。我们的分析结果表明,这三个信号系统组分中任何一个的下调都会显著影响个体的血细胞比容水平。此外,我们的分析预测,外源性Epo注射(一种已用于多种血液疾病的现有治疗方法)可能补偿Epo激素水平、STAT5或EpoR/JAK2表达水平单一下调的影响,并且可能不足以应对JAK2 - STAT5信号级联中所有元件的联合下调。