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利用稳定突变在T4溶菌酶的配体结合疏水腔内构建一个带电基团。

Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.

作者信息

Liu Lijun, Baase Walter A, Michael Miya M, Matthews Brian W

机构信息

Institute of Molecular Biology and Department of Physics, 1229 University of Oregon, Eugene, Oregon 97403-1229, USA.

出版信息

Biochemistry. 2009 Sep 22;48(37):8842-51. doi: 10.1021/bi900685j.

Abstract

Both large-to-small and nonpolar-to-polar mutations in the hydrophobic core of T4 lysozyme cause significant loss in stability. By including supplementary stabilizing mutations we constructed a variant that combines the cavity-creating substitution Leu99 --> Ala with the buried charge mutant Met102 --> Glu. Crystal structure determination confirmed that this variant has a large cavity with the side chain of Glu102 located within the cavity wall. The cavity includes a large disk-shaped region plus a bulge. The disk-like region is essentially nonpolar, similar to L99A, while the Glu102 substituent is located in the vicinity of the bulge. Three ordered water molecules bind within this part of the cavity and appear to stabilize the conformation of Glu102. Glu102 has an estimated pKa of about 5.5-6.5, suggesting that it is at least partially charged in the crystal structure. The polar ligands pyridine, phenol and aniline bind within the cavity, and crystal structures of the complexes show one or two water molecules to be retained. Nonpolar ligands of appropriate shape can also bind in the cavity and in some cases exclude all three water molecules. This disrupts the hydrogen-bond network and causes the Glu102 side chain to move away from the ligand by up to 0.8 A where it remains buried in a completely nonpolar environment. Isothermal titration calorimetry revealed that the binding of these compounds stabilizes the protein by 4-6 kcal/mol. For both polar and nonpolar ligands the binding is enthalpically driven. Large negative changes in entropy adversely balance the binding of the polar ligands, whereas entropy has little effect on the nonpolar ligand binding.

摘要

T4溶菌酶疏水核心中从大到小以及从非极性到极性的突变都会导致稳定性显著丧失。通过引入补充性的稳定突变,我们构建了一个变体,它将产生空腔的替换Leu99→Ala与埋藏电荷突变体Met102→Glu结合在一起。晶体结构测定证实,该变体有一个大空腔,Glu102的侧链位于空腔壁内。该空腔包括一个大的盘状区域以及一个凸起。盘状区域基本上是非极性的,类似于L99A,而Glu102取代基位于凸起附近。三个有序水分子结合在空腔的这一部分内,似乎稳定了Glu102的构象。Glu102的估计pKa约为5.5 - 6.5,这表明它在晶体结构中至少部分带电荷。极性配体吡啶、苯酚和苯胺结合在空腔内,复合物的晶体结构显示有一个或两个水分子被保留。形状合适的非极性配体也能结合在空腔内,在某些情况下会排除所有三个水分子。这会破坏氢键网络,导致Glu102侧链远离配体移动多达0.8埃,此时它仍埋藏在完全非极性的环境中。等温滴定量热法表明,这些化合物的结合使蛋白质稳定4 - 6千卡/摩尔。对于极性和非极性配体,结合都是由焓驱动的。极性配体结合时熵的大幅负变化对结合产生不利影响,而非极性配体结合时熵的影响很小。

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