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内含子 7 保守序列元件调节 SMN 基因的剪接。

Intron 7 conserved sequence elements regulate the splicing of the SMN genes.

机构信息

The Research Institute at Nationwide Children's Hospital, Department of Pediatrics, The Ohio State University, Columbus, OH 43205, USA.

出版信息

Hum Genet. 2009 Dec;126(6):833-41. doi: 10.1007/s00439-009-0733-7.

DOI:10.1007/s00439-009-0733-7
PMID:19701774
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2891348/
Abstract

Proximal spinal muscular atrophy (SMA) is a neuromuscular disease caused by low levels of the survival motor neuron (SMN) protein. In humans there are two nearly identical SMN genes, SMN1 and SMN2. The SMN2 gene generates a truncated protein, due to a C to T nucleotide alteration in exon 7, which leads to inefficient RNA splicing of exon 7. This exclusion of SMN exon 7 is central to the onset of the SMA disease. Exon 7 splicing is regulated by a number of exonic and intronic splicing regulatory sequences and the trans-factors that bind them. Here, we identify conserved intronic sequences in the SMN genes. Five regions were examined due to conservation and their proximity to exons 6 through 8. Using mutagenesis two conserved elements located in intron 7 of the SMN genes that affect exon 7 splicing have been identified. Additional analysis of one of these regions showed decreased inclusion of exon 7 in SMN transcripts when deletions or mutations were introduced. Furthermore, multimerization of this conserved region was capable of restoring correct SMN splicing. Together these results describe a novel intronic splicing enhancer sequence located in the final intron of the SMN genes. This discovery provides insight into the splicing of the SMN genes using conserved intonic sequence as a tool to uncover regions of importance in pre-messenger RNA splicing. A better understanding of the way SMN premRNA is spliced can lead to the development of new therapies.

摘要

近端脊髓性肌萎缩症(SMA)是一种由运动神经元存活(SMN)蛋白水平降低引起的神经肌肉疾病。在人类中,有两个几乎相同的 SMN 基因,SMN1 和 SMN2。SMN2 基因由于第 7 外显子中的 C 到 T 核苷酸改变而产生截断蛋白,导致第 7 外显子的 RNA 剪接效率低下。这种第 7 外显子的排除是 SMA 疾病发病的核心。外显子 7 的剪接受许多外显子和内含子剪接调节序列以及结合它们的反式因子调节。在这里,我们鉴定了 SMN 基因中的保守内含子序列。由于保守性和与外显子 6 到 8 的接近性,检查了五个区域。通过诱变,在 SMN 基因的 7 号内含子中鉴定出两个影响外显子 7 剪接的保守元件。对其中一个区域的进一步分析表明,当引入缺失或突变时,SMN 转录物中外显子 7 的包含减少。此外,该保守区域的多聚化能够恢复正确的 SMN 剪接。这些结果共同描述了位于 SMN 基因最后一个内含子中的新的内含子剪接增强子序列。这一发现提供了使用保守内含子序列作为工具来揭示前信使 RNA 剪接中重要区域的 SMN 基因剪接的见解。更好地了解 SMN pre-mRNA 是如何剪接的,可以为新疗法的开发提供依据。

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本文引用的文献

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Delivery of bifunctional RNAs that target an intronic repressor and increase SMN levels in an animal model of spinal muscular atrophy.在脊髓性肌萎缩症动物模型中递送靶向内含子阻遏物并提高SMN水平的双功能RNA。
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The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene.RNA结合蛋白hnRNP Q调节生存运动神经元2(SMN2)基因中外显子7的利用。
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Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice.对异质性核糖核蛋白A1/A2内含子剪接沉默子进行反义掩蔽可纠正转基因小鼠中的运动神经元生存蛋白2(SMN2)剪接。
Am J Hum Genet. 2008 Apr;82(4):834-48. doi: 10.1016/j.ajhg.2008.01.014. Epub 2008 Mar 27.
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Restoration of SMN function: delivery of a trans-splicing RNA re-directs SMN2 pre-mRNA splicing.SMN功能的恢复:反式剪接RNA的递送可重定向SMN2前体mRNA的剪接。
Mol Ther. 2007 Aug;15(8):1471-8. doi: 10.1038/sj.mt.6300222. Epub 2007 Jun 5.
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An intronic element contributes to splicing repression in spinal muscular atrophy.一个内含子元件促成脊髓性肌萎缩症中的剪接抑制。
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Splicing of a critical exon of human Survival Motor Neuron is regulated by a unique silencer element located in the last intron.人类存活运动神经元关键外显子的剪接受位于最后一个内含子中的独特沉默子元件调控。
Mol Cell Biol. 2006 Feb;26(4):1333-46. doi: 10.1128/MCB.26.4.1333-1346.2006.
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Computational definition of sequence motifs governing constitutive exon splicing.调控组成型外显子剪接的序列基序的计算定义
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A negative element in SMN2 exon 7 inhibits splicing in spinal muscular atrophy.SMN2基因第7外显子中的一个负性元件会抑制脊髓性肌萎缩症中的剪接过程。
Nat Genet. 2003 Aug;34(4):460-3. doi: 10.1038/ng1207.
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ESEfinder: A web resource to identify exonic splicing enhancers.ESEfinder:一个用于识别外显子剪接增强子的网络资源。
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