Stein Lisa Y, Jones Grant, Alexander Benjamin, Elmund Keith, Wright-Jones Cindy, Nealson Kenneth H
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91121, USA.
FEMS Microbiol Ecol. 2002 Dec 1;42(3):431-40. doi: 10.1111/j.1574-6941.2002.tb01032.x.
During the late summer to early fall, Horsetooth Reservoir in Fort Collins, CO, USA is fully stratified and exhibits seasonally high fluxes of iron, manganese, and metal-rich particles into the water column. Particles were collected from the mid-region of the hypolimnion and examined for metal content. Nucleic acids extracted from the particles were used to construct bacterial and archaeal 16S rDNA clone libraries. Surprisingly, 50% of cloned bacterial genes were closely related to a coherent cluster within Candidate Division OP10. To our knowledge, this is the first report of an environmental gene clone library that exhibits a dominance of OP10-related clones. Several other sequences, many with long branch lengths, clustered within eight separate bacterial divisions and the diatom chloroplasts. Most of these divisions are commonly found in freshwater environments. However, gene sequences from characterized metal-oxidizing or metal-reducing bacteria were not identified. The archaeal gene clone libraries contained diverse sequences, most with close homology to previously characterized gene clones of methanogens or uncultivated Crenarchaeota from soil and lacustrine environments. This study identified a unique environment where OP10 bacteria are potentially abundant. Furthermore, we demonstrated that the metal-rich particles from this reservoir support a diverse and interesting community of microorganisms.
在夏末至秋初期间,美国科罗拉多州柯林斯堡的马蹄铁水库完全分层,并且向水柱中输送的铁、锰和富含金属的颗粒呈现出季节性的高流量。从湖下层中部区域采集颗粒并检测其金属含量。从颗粒中提取的核酸被用于构建细菌和古菌的16S rDNA克隆文库。令人惊讶的是,50%的克隆细菌基因与候选分类OP10内的一个连贯簇密切相关。据我们所知,这是首次报道一个环境基因克隆文库中OP10相关克隆占主导地位。其他几个序列,许多具有较长的分支长度,聚集在八个不同的细菌分类和硅藻叶绿体中。这些分类中的大多数常见于淡水环境中。然而,未鉴定出已表征的金属氧化或金属还原细菌的基因序列。古菌基因克隆文库包含多种序列,大多数与先前表征的来自土壤和湖泊环境的产甲烷菌或未培养的泉古菌的基因克隆具有高度同源性。这项研究确定了一个OP10细菌可能大量存在的独特环境。此外,我们证明了来自该水库的富含金属的颗粒支持着一个多样且有趣的微生物群落。