氨氧化动力学决定了硝化古菌和细菌的生态位分离。

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria.

作者信息

Martens-Habbena Willm, Berube Paul M, Urakawa Hidetoshi, de la Torre José R, Stahl David A

机构信息

Department of Civil & Environmental Engineering, University of Washington, Seattle, Washington 98105, USA.

出版信息

Nature. 2009 Oct 15;461(7266):976-9. doi: 10.1038/nature08465. Epub 2009 Sep 30.

Abstract

The discovery of ammonia oxidation by mesophilic and thermophilic Crenarchaeota and the widespread distribution of these organisms in marine and terrestrial environments indicated an important role for them in the global nitrogen cycle. However, very little is known about their physiology or their contribution to nitrification. Here we report oligotrophic ammonia oxidation kinetics and cellular characteristics of the mesophilic crenarchaeon 'Candidatus Nitrosopumilus maritimus' strain SCM1. Unlike characterized ammonia-oxidizing bacteria, SCM1 is adapted to life under extreme nutrient limitation, sustaining high specific oxidation rates at ammonium concentrations found in open oceans. Its half-saturation constant (K(m) = 133 nM total ammonium) and substrate threshold (<or=10 nM) closely resemble kinetics of in situ nitrification in marine systems and directly link ammonia-oxidizing Archaea to oligotrophic nitrification. The remarkably high specific affinity for reduced nitrogen (68,700 l per g cells per h) of SCM1 suggests that Nitrosopumilus-like ammonia-oxidizing Archaea could successfully compete with heterotrophic bacterioplankton and phytoplankton. Together these findings support the hypothesis that nitrification is more prevalent in the marine nitrogen cycle than accounted for in current biogeochemical models.

摘要

嗜温与嗜热泉古菌对氨的氧化作用的发现,以及这些微生物在海洋和陆地环境中的广泛分布,表明它们在全球氮循环中发挥着重要作用。然而,人们对它们的生理学特性或它们在硝化作用中的贡献却知之甚少。在此,我们报告嗜温泉古菌“暂定嗜盐硝化侏儒菌”菌株SCM1的贫营养氨氧化动力学及细胞特征。与已鉴定的氨氧化细菌不同,SCM1适应在极端营养限制条件下生存,在开阔海洋中发现的铵浓度下维持高比氧化速率。其半饱和常数(K(m)=133 nM总铵)和底物阈值(≤10 nM)与海洋系统中原位硝化作用的动力学非常相似,直接将氨氧化古菌与贫营养硝化作用联系起来。SCM1对还原态氮具有极高的比亲和力(每克细胞每小时68,700升),这表明类似嗜盐硝化侏儒菌的氨氧化古菌能够成功地与异养浮游细菌和浮游植物竞争。这些发现共同支持了这样一个假设,即硝化作用在海洋氮循环中比当前生物地球化学模型所描述的更为普遍。

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