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基于单体型的短串联重复序列位点种系突变特征分析。

Haplotype-assisted characterization of germline mutations at short tandem repeat loci.

机构信息

Forensische Genetik, Röntgenstrasse 23, 48149, Münster, Germany.

出版信息

Int J Legal Med. 2010 May;124(3):177-82. doi: 10.1007/s00414-009-0377-0. Epub 2009 Nov 11.

DOI:10.1007/s00414-009-0377-0
PMID:19904551
Abstract

In this study, 98 families with 101 mutations were analyzed in depth in which a mutation had been observed at one of the four loci D3S1358, FGA, ACTBP2, and VWA. To determine the origin (male/female) of the mutation, five to seven polymorphic flanking markers were selected for each locus concerned and used to construct family-specific haplotypes. Additionally, all alleles of the STR system concerned were sequenced. With this duplicate approach, it was possible to identify the mutated structure and/or mutation event in the vast majority of cases. The ratio of one-step to two-step mutations was 100:1. The ratio of paternal to maternal mutations was 76:8. The ratio of gains to losses was 47:50. Also, the mutation rates in two systems, ACTBP2 and VWA, were clearly higher than those given in the literature.

摘要

在这项研究中,对 98 个家系的 101 个突变进行了深入分析,这些家系中的一个突变发生在四个位点 D3S1358、FGA、ACTBP2 和 VWA 之一。为了确定突变的来源(父本/母本),每个相关位点选择了五到七个多态侧翼标记,用于构建家系特异性单倍型。此外,还对所涉及的 STR 系统的所有等位基因进行了测序。通过这种重复的方法,绝大多数情况下都可以识别突变的结构和/或突变事件。一步突变和两步突变的比例为 100:1。父源突变和母源突变的比例为 76:8。获得的突变和丢失的突变的比例为 47:50。此外,ACTBP2 和 VWA 两个系统的突变率明显高于文献中的报道。

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1
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引用本文的文献

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Elevated germline mutation rate in teenage fathers.青少年父亲的生殖系突变率升高。
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Mutation rates of 15 X chromosomal short tandem repeat markers.15个X染色体短串联重复序列标记的突变率
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Comparison of southern Chinese Han and Brazilian Caucasian mutation rates at autosomal short tandem repeat loci used in human forensic genetics.中国南方汉族和巴西白种人常染色体短串联重复序列位点突变率的比较,这些位点用于人类法医遗传学。

本文引用的文献

1
Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCR amplification kit.17 个 Y 染色体短串联重复序列多态性的综合突变分析,包含在 AmpFlSTR Yfiler PCR 扩增试剂盒中。
Int J Legal Med. 2009 Nov;123(6):471-82. doi: 10.1007/s00414-009-0342-y. Epub 2009 Mar 26.
2
Population and segregation data on 17 Y-STRs: results of a GEP-ISFG collaborative study.17个Y染色体短串联重复序列(Y-STR)的群体与隔离数据:一项全球电泳分型计划(GEP)与国际法医遗传学会(ISFG)合作研究的结果
Int J Legal Med. 2008 Nov;122(6):529-33. doi: 10.1007/s00414-008-0265-z. Epub 2008 Jul 24.
3
Single and double incompatibility at vWA and D8S1179/D21S11 loci between mother and child: implications in kinship analysis.
Int J Legal Med. 2014 Jan;128(1):1-9. doi: 10.1007/s00414-013-0847-2. Epub 2013 Apr 3.
母子之间在vWA及D8S1179/D21S11基因座的单重和双重不匹配:对亲缘关系分析的影响
Clin Chim Acta. 2008 Sep;395(1-2):162-5. doi: 10.1016/j.cca.2008.04.022. Epub 2008 May 2.
4
Mother-child double incompatibility at vWA and D5S818 loci in paternity testing.亲子鉴定中vWA和D5S818基因座的母子双重不相容性。
Clin Chem Lab Med. 2007;45(10):1288-91. doi: 10.1515/CCLM.2007.276.
5
Microsatellite mutation in the maternally/paternally transmitted D18S51 locus: two cases of allele mismatch in the child.母系/父系遗传的D18S51位点微卫星突变:两例子代等位基因不匹配情况
Clin Chim Acta. 2007 Jun;381(2):171-5. doi: 10.1016/j.cca.2007.01.032. Epub 2007 Mar 3.
6
Haplotypes and mutation analysis of 22 Y-chromosomal STRs in Korean father-son pairs.韩国父子对中22个Y染色体短串联重复序列的单倍型和突变分析。
Int J Legal Med. 2007 Mar;121(2):128-35. doi: 10.1007/s00414-006-0130-x. Epub 2006 Nov 15.
7
Y-chromosomal microsatellite mutation rates in a population sample from northwestern Germany.德国西北部人群样本中的Y染色体微卫星突变率。
Int J Legal Med. 2007 Sep;121(5):359-63. doi: 10.1007/s00414-006-0123-9. Epub 2006 Oct 26.
8
Meiosis study in a population sample from Afghanistan: allele frequencies and mutation rates of 16 STR loci.阿富汗人群样本中的减数分裂研究:16个短串联重复序列(STR)位点的等位基因频率和突变率
Int J Legal Med. 2006 Sep;120(5):300-2. doi: 10.1007/s00414-006-0091-0. Epub 2006 Jul 13.
9
Mother-child exclusion due to paternal uniparental disomy 6.因父源单亲二体6导致的母婴排除。
Int J Legal Med. 2006 Sep;120(5):282-5. doi: 10.1007/s00414-006-0077-y. Epub 2006 Apr 8.
10
Genetics and genomics of core short tandem repeat loci used in human identity testing.用于人类身份鉴定的核心短串联重复序列位点的遗传学与基因组学
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