Lee Gwangrog, Muramoto Garrett G, Chute John P, Marszalek Piotr E
Center for Biologically Inspired Materials and Material Systems and Department of Mechanical Engineering and Materials Science, Duke University, Durham, NC 27708, USA.
J Nanosci Nanotechnol. 2009 Dec;9(12):7359-63. doi: 10.1166/jnn.2009.1776.
The exposure of cancer cells to ionizing radiation results in potentially lethal DNA lesions. For this reason, identification and quantification of various lesions have intensively been investigated. It has also been anticipated that DNA lesions may affect not only the chemical but also the mechanical integrity of the double helix. However, the relationship between DNA damage and mechanics has not been studied. Here, the mechanical properties of DNA damaged by ionizing radiation are examined at a single-molecule level by stretching lambda-phage DNA molecules that have been exposed to gamma-radiation. A simple-stretching method using Atomic Force Microscopy (AFM) not only identifies the types of DNA lesions but also provides information about the mechanical instability of damaged DNA against intact DNA. The results include the elastic properties of damaged DNA with single strand breaks (SSBs), double strand breaks (DSBs), and multiple-lesion clusters. The elasticity of irradiated DNA is changed compared to that of intact DNA. Specifically, consecutive stretching cycles of DNA containing multiple SSBs progressively shorten the width of the overstretching B-S transition. This originates from force-induced melting off of single-stranded DNA fragments, which upon consecutive stretching cycles converts the double helix into a hybrid structure with a growing number of single stranded gaps. Closely spaced SSBs on opposite strands, upon stretching, result in a rupture of the double helix at a decreased force of approximately 200 pN and other clustered lesions result in lowering the force at which force-induced melting of the double helix occurs. Taken together, our results suggest that single-molecule force spectroscopy may become a useful nanoscale DNA diagnostic tool.
癌细胞暴露于电离辐射会导致具有潜在致死性的DNA损伤。因此,对各种损伤的识别和定量研究一直十分深入。人们还预计,DNA损伤可能不仅会影响双螺旋的化学完整性,还会影响其机械完整性。然而,DNA损伤与力学之间的关系尚未得到研究。在此,通过拉伸经γ辐射处理的λ噬菌体DNA分子,在单分子水平上研究了电离辐射损伤的DNA的力学性质。一种使用原子力显微镜(AFM)的简单拉伸方法不仅可以识别DNA损伤的类型,还能提供受损DNA相对于完整DNA的机械不稳定性信息。研究结果包括具有单链断裂(SSB)、双链断裂(DSB)和多损伤簇的受损DNA的弹性特性。与完整DNA相比,受辐照DNA的弹性发生了变化。具体而言,含有多个SSB的DNA连续拉伸循环会逐渐缩短过度拉伸B-S转变的宽度。这源于力诱导的单链DNA片段解链,在连续拉伸循环中,双螺旋会转变为单链间隙不断增加的杂合结构。相反链上紧密间隔的SSB在拉伸时会导致双螺旋在约200 pN的较低力下断裂,其他簇状损伤会降低双螺旋发生力诱导解链的力。综上所述,我们的结果表明单分子力谱可能成为一种有用的纳米级DNA诊断工具。
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