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Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy.

作者信息

Fujiwara Tohru, O'Geen Henriette, Keles Sunduz, Blahnik Kimberly, Linnemann Amelia K, Kang Yoon-A, Choi Kyunghee, Farnham Peggy J, Bresnick Emery H

机构信息

University of Wisconsin School of Medicine and Public Health, Wisconsin Institutes for Medical Research, Madison, 53705, USA.

出版信息

Mol Cell. 2009 Nov 25;36(4):667-81. doi: 10.1016/j.molcel.2009.11.001.


DOI:10.1016/j.molcel.2009.11.001
PMID:19941826
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2784893/
Abstract

GATA factors interact with simple DNA motifs (WGATAR) to regulate critical processes, including hematopoiesis, but very few WGATAR motifs are occupied in genomes. Given the rudimentary knowledge of mechanisms underlying this restriction and how GATA factors establish genetic networks, we used ChIP-seq to define GATA-1 and GATA-2 occupancy genome-wide in erythroid cells. Coupled with genetic complementation analysis and transcriptional profiling, these studies revealed a rich collection of targets containing a characteristic binding motif of greater complexity than WGATAR. GATA factors occupied loci encoding multiple components of the Scl/TAL1 complex, a master regulator of hematopoiesis and leukemogenic target. Mechanistic analyses provided evidence for crossregulatory and autoregulatory interactions among components of this complex, including GATA-2 induction of the hematopoietic corepressor ETO-2 and an ETO-2-negative autoregulatory loop. These results establish fundamental principles underlying GATA factor mechanisms in chromatin and illustrate a complex network of considerable importance for the control of hematopoiesis.

摘要

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[3]
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Genes Dev. 2009-4-1

[4]
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Cell Host Microbe. 2009-3-19

[5]
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Proc Natl Acad Sci U S A. 2009-2-17

[6]
Expression of the leukemia oncogene Lmo2 is controlled by an array of tissue-specific elements dispersed over 100 kb and bound by Tal1/Lmo2, Ets, and Gata factors.

Blood. 2009-6-4

[7]
Human adenylate kinase 2 deficiency causes a profound hematopoietic defect associated with sensorineural deafness.

Nat Genet. 2009-1

[8]
SCL and associated proteins distinguish active from repressive GATA transcription factor complexes.

Blood. 2009-3-5

[9]
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[10]
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