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东亚-北美间断分布野生稻属(禾本科)的系统发育和生物地理学。

Phylogeny and biogeography of the eastern Asian-North American disjunct wild-rice genus (Zizania L., Poaceae).

机构信息

Freshwater Ecological Field Station of Liangzi Lake, Wuhan University, Wuhan 430072, China.

出版信息

Mol Phylogenet Evol. 2010 Jun;55(3):1008-17. doi: 10.1016/j.ympev.2009.11.018. Epub 2009 Nov 26.

Abstract

The wild-rice genus Zizania includes four species disjunctly distributed in eastern Asia and North America, with three species (Z. aquatica, Z. palustris, and Z. texana) in North America and one (Z. latifolia) in eastern Asia. The phylogeny of Zizania was constructed using sequences of seven DNA fragments (atpB-rbcL, matK, rps16, trnL-F, trnH-psbA, nad1, and Adh1a) from chloroplast, mitochondrial, and nuclear genomes. Zizania is shown to be monophyletic with the North American species forming a clade and the eastern Asian Z. latifolia sister to the North American clade. The divergence between the eastern Asian Z. latifolia and the North American clade was dated to be 3.74 (95% HPD: 1.04-7.23) million years ago (mya) using the Bayesian dating method with the combined atpB-rbcL, matK, rps16, trnL-F, and nad1 data. Biogeographic analyses using a likelihood method suggest the North American origin of Zizania and its migration into eastern Asia via the Bering land bridge. Among the three North American species, the organellar data and the haplotype network of the nuclear Adh1a gene show a close relationship between Z. palustris and the narrowly distributed endangered species Z. texana. Bayesian dating estimated the divergence of North American Zizania to be 0.71 (95% HPD: 0.12-1.54) mya in the Pleistocene. The non-monophyly of Z. palustris and Z. aquatica in the organellar and nuclear data is most likely caused by incomplete lineage sorting, yet low-frequency unidirectional introgression of Z. palustris into Z. aquatica is present in the nuclear data as well.

摘要

野生稻属包括四个物种,分别分布在东亚和北美洲,其中三个物种(Z. aquatica、Z. palustris 和 Z. texana)分布在北美洲,一个物种(Z. latifolia)分布在东亚。利用叶绿体、线粒体和核基因组的七个 DNA 片段(atpB-rbcL、matK、rps16、trnL-F、trnH-psbA、nad1 和 Adh1a)的序列构建了野生稻属的系统发育。结果表明,野生稻属是单系的,其中北美洲的物种形成一个分支,而东亚的 Z. latifolia 与北美洲的分支是姐妹关系。使用贝叶斯日期推断法,结合 atpB-rbcL、matK、rps16、trnL-F 和 nad1 数据,对东亚的 Z. latifolia 和北美洲分支之间的分歧进行了估计,结果表明其分歧时间约为 374 万年(95% HPD:104-723)前。使用似然法进行的生物地理分析表明,野生稻属起源于北美洲,并通过白令陆桥迁移到东亚。在三个北美洲物种中,细胞器数据和核 Adh1a 基因的单倍型网络显示 Z. palustris 和分布狭窄的濒危物种 Z. texana 之间存在密切关系。贝叶斯日期推断法估计,在更新世,北美洲野生稻属的分歧时间约为 710 万年(95% HPD:0.12-1.54)前。细胞器和核数据中 Z. palustris 和 Z. aquatica 的非单系性很可能是不完全谱系分选造成的,但核数据中也存在 Z. palustris 向 Z. aquatica 单向低频基因渗透。

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