Center for Evolutionary and Theoretical Immunology, Biology MSC03 2020, 1 University of New Mexico, Albuquerque, NM 87131, USA.
Mol Immunol. 2010 Jan;47(4):849-60. doi: 10.1016/j.molimm.2009.10.019. Epub 2009 Dec 3.
A 70-mer-oligonucleotide-based microarray (1152 features) that emphasizes stress and immune responses factors was constructed to study transcriptomic responses of the snail Biomphalaria glabrata to different immune challenges. In addition to sequences with relevant putative ID and Gene Ontology (GO) annotation, the array features non-immune factors and unknown B. glabrata ESTs for functional gene discovery. The transcription profiles of B. glabrata (3 biological replicates, each a pool of 5 snails) were recorded at 12h post-wounding, exposure to Gram negative or Gram positive bacteria (Escherichia coli and Micrococcus luteus, respectively), or infection with compatible trematode parasites (Schistosoma mansoni or Echinostoma paraensei, 20 miracidia/snail), relative to controls, using universal reference RNA. The data were subjected to Significance Analysis for Microarrays (SAM), with a false positive rate (FPR) <or=10%. Wounding yielded a modest differential expression profile (27 up/21 down) with affected features mostly dissimilar from other treatments. Partially overlapping, yet distinct expression profiles were recorded from snails challenged with E. coli (83 up/20 down) or M. luteus (120 up/42 down), mostly showing up-regulation of defense and stress-related features. Significantly altered expression of selected immune features indicates that B. glabrata detects and responds differently to compatible trematodes. Echinostoma paraensei infection was associated mostly with down-regulation of many (immune-) transcripts (42 up/68 down), whereas S. mansoni exposure yielded a preponderance of up-regulated features (140 up/23 down), with only few known immune genes affected. These observations may reflect the divergent strategies developed by trematodes during their evolution as specialized pathogens of snails to negate host defense responses. Clearly, the immune defenses of B. glabrata distinguish and respond differently to various immune challenges.
构建了一个基于 70 -mer-oligonucleotide 的微阵列(1152 个特征),该微阵列强调应激和免疫反应因素,用于研究 snail Biomphalaria glabrata 对不同免疫挑战的转录组反应。除了具有相关假定 ID 和基因本体论 (GO) 注释的序列外,该阵列还具有非免疫因子和未知的 B. glabrata EST,用于功能基因发现。在创伤后 12 小时,用通用参考 RNA 记录了 B. glabrata 的转录谱(3 个生物学重复,每个重复是 5 只 snail 的混合物),分别暴露于革兰氏阴性或革兰氏阳性细菌(大肠杆菌和微球菌),或感染相容的吸虫寄生虫(曼氏血吸虫或 Paraensei 棘口吸虫,20 尾尾蚴/ snail),相对于对照。使用通用参考 RNA,数据经过了微阵列显著性分析 (SAM),假阳性率 (FPR) <or=10%。创伤产生了适度的差异表达谱(27 个上调/21 个下调),受影响的特征与其他处理大多不同。用大肠杆菌(83 个上调/20 个下调)或微球菌(120 个上调/42 个下调)挑战的 snail 记录了部分重叠但又不同的表达谱,主要表现为防御和应激相关特征的上调。选定免疫特征的表达明显改变表明,B. glabrata 对相容的吸虫寄生虫的检测和反应不同。Paraensei 棘口吸虫感染主要与许多(免疫)转录物的下调有关(42 个上调/68 个下调),而暴露于曼氏血吸虫则产生了大量上调的特征(140 个上调/23 个下调),只有少数已知的免疫基因受到影响。这些观察结果可能反映了吸虫寄生虫在进化过程中作为 snail 的专门病原体所发展出的不同策略,以否定宿主的防御反应。显然,B. glabrata 的免疫防御能够区分并对各种免疫挑战做出不同的反应。