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结核分枝杆菌 ArgP 的晶体结构证实了全长 LysR 转录调节剂的两种不同构象,并揭示了其在 DNA 结合和转录调节中的功能。

Crystal structure of ArgP from Mycobacterium tuberculosis confirms two distinct conformations of full-length LysR transcriptional regulators and reveals its function in DNA binding and transcriptional regulation.

机构信息

National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing 100101, China.

出版信息

J Mol Biol. 2010 Mar 5;396(4):1012-24. doi: 10.1016/j.jmb.2009.12.033. Epub 2009 Dec 28.

Abstract

Mycobacterium tuberculosis presents a challenging medical problem partly due to its persistent nonreplicative state. The inhibitor of chromosomal replication (iciA) protein encoded by M. tuberculosis has been suggested to inhibit chromosome replication initiation in vitro. However, iciA has also been identified as arginine permease (ArgP), a regulatory transcription factor for arginine outward transport. In order to understand the function of ArgP, we have determined its crystal structure by X-ray crystallography to a resolution of 2.7 A. ArgP is a member of the LysR-type transcriptional regulators (LTTRs) and forms a homodimer with each subunit containing two domains: a DNA binding domain (DBD) and a regulatory domain (RD). Two conformationally distinct subunits were identified: closed subunit and open subunit. This phenomenon was first observed in LTTR CbnR, but not in LTTR CrgA, and might be common in LTTRs. We identified two forms of dimers: DBD-type dimers and RD-type dimers. The former is confirmed in solution, and the latter is considered to form oligomers during function. We provide the first structural insights into the interaction of the extreme C-terminal residues with the DBD, which is confirmed by mutagenesis and analytical ultracentrifugation to be important for stability of the functional dimer. The structure serves as a model to suggest how three critical aspects, namely, DNA binding, homo-oligomerization, and interaction with RNAP, are mediated during regulation processing. A model is proposed for the LysR family of dimeric regulators.

摘要

结核分枝杆菌(Mycobacterium tuberculosis)呈现出挑战性的医学问题,部分原因是其持续的非复制状态。结核分枝杆菌编码的染色体复制抑制剂(iciA)蛋白被认为在体外抑制染色体复制起始。然而,iciA 也被鉴定为精氨酸通透酶(ArgP),这是精氨酸外向转运的调节转录因子。为了理解 ArgP 的功能,我们通过 X 射线晶体学将其晶体结构解析至 2.7Å 的分辨率。ArgP 是 LysR 型转录调节因子(LTTRs)的成员,每个亚基形成同源二聚体,包含两个结构域:DNA 结合结构域(DBD)和调节结构域(RD)。鉴定出两种构象上不同的亚基:闭合亚基和开放亚基。这种现象首次在 LTTR CbnR 中观察到,但在 LTTR CrgA 中没有观察到,可能在 LTTRs 中很常见。我们鉴定了两种形式的二聚体:DBD 型二聚体和 RD 型二聚体。前者在溶液中得到证实,后者在功能过程中被认为形成寡聚体。我们提供了第一个关于极端 C 末端残基与 DBD 相互作用的结构见解,这通过突变和分析超速离心实验得到证实,对于功能性二聚体的稳定性非常重要。该结构为 DNA 结合、同源寡聚化和与 RNAP 相互作用的三个关键方面在调节过程中是如何介导的提供了模型。提出了一个 LysR 家族二聚体调节剂的模型。

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