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应用具有异质生长的双表型颜色移动模型于大鼠肝癌发生实验。

Application of a two-phenotype color-shift model with heterogeneous growth to a rat hepatocarcinogenesis experiment.

机构信息

Department Biostatistics-C060, German Cancer Research Center, Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany.

出版信息

Math Biosci. 2010 Apr;224(2):95-100. doi: 10.1016/j.mbs.2009.12.009. Epub 2010 Jan 4.

Abstract

The color-shift model (CSM) was introduced by Kopp-Schneider et al. [1] to describe formation and progression of foci of altered hepatocytes (FAH). It incorporates the field-effect hypothesis which postulates that entire colonies of altered hepatocytes simultaneously alter their phenotype. In the original CSM, FAH grow with deterministic growth rate and change their phenotype after an exponentially distributed waiting time. A modification of the original color-shift model (CSM beta) is presented here in which the growth rate varies from focus to focus according to a beta distribution. The concept of an exponentially distributed waiting time to phenotype change is modified to the concept of a random radius at which phenotype changes and this radius is modelled as beta distributed. The original and the modified CSM are applied to data from an initiation-promotion rat hepatocarcinogenesis experiment with diethylnitrosomorpholine (DEN) and N-nitrosomorpholine (NNM), in which two phenotypes of FAH were observed in hematoxilin/eosin (H&E) stained liver sections. The Cramer-von-Mises Distance is used as a measure for the discrepancy between empirical and theoretical size distributions. Comparisons of model fit show that considerable improvement is obtained for CSM beta compared to the original CSM.

摘要

颜色转换模型(CSM)由 Kopp-Schneider 等人引入[1],用于描述改变的肝细胞(FAH)病灶的形成和进展。它包含了场效应假说,该假说假定整个改变的肝细胞群体同时改变其表型。在原始 CSM 中,FAH 以确定性生长速率生长,并在指数分布的等待时间后改变其表型。本文提出了原始颜色转换模型(CSM beta)的一种修改,其中生长速率根据 beta 分布从焦点到焦点变化。指数分布的等待时间改变表型的概念被修改为表型改变的随机半径的概念,并且该半径被建模为 beta 分布。原始和修改后的 CSM 应用于用二乙基亚硝胺(DEN)和 N-亚硝基亚硝胺(NNM)进行的大鼠肝癌起始促进实验的数据,在该实验中,在苏木精/伊红(H&E)染色的肝切片中观察到两种 FAH 表型。Cramer-von-Mises 距离用作经验和理论大小分布之间差异的度量。模型拟合的比较表明,与原始 CSM 相比,CSM beta 得到了相当大的改进。

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