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[小染色体植物基因组的染色体组织]

[Chromosomal organization of the genomes of small-chromosome plants].

作者信息

Muravenko O V, Zelenin A V

出版信息

Genetika. 2009 Nov;45(11):1516-29.

Abstract

An effective approach to study the chromosome organization in genomes of plants with small chromosomes and/or with low-informative C-banding patterns was developed in the course of investigation of the karyotypes of cotton plant, camomile, flax, and pea. To increase the resolving power of chromosome analysis, methods were worked out for revealing early replication patterns on chromosomes and for artificial impairment of mitotic chromosome condensation with the use of a DNA intercalator, 9-aminoacridine (9-AMA). To estimate polymorphism of the patterns of C-banding of small chromosomes on preparations obtained with the use of 9-AMA, it is necessary to choose a length interval that must not exceed three average sizes of metaphase chromosomes without the intercalator. The use of 9-AMA increases the resolution of differential C- and OR-banding and the precision of physical chromosome mapping by the FISH method. Of particular importance in studying small chromosomes is optimization of the computer-aided methods used to obtain and process chromosome images. The complex approach developed for analysis of the chromosome organization in plant genomes was used to study the karyotypes of 24 species of the genus Linum L. It permitted their chromosomes to be identified for the first time, and, in addition, B chromosomes were discovered and studied in the karyotypes of the species of the section Syllinum. By similarity of the karyotypes, the studied flax species were distributed in eight groups in agreement with the clusterization of these species according to the results of RAPD analysis performed in parallel. Systematic positions and phylogenetic relationships of the studied flax species were verified. Out results can serve as an important argument in favour of the proposal to develop a special program for sequencing the genome of cultivated flax (L. usitatissimum L.), which is a major representative of small-chromosome species.

摘要

在对棉花、洋甘菊、亚麻和豌豆的核型进行研究的过程中,开发出了一种有效的方法,用于研究具有小染色体和/或低信息含量C带模式的植物基因组中的染色体组织。为了提高染色体分析的分辨能力,研究出了一些方法,用于揭示染色体上的早期复制模式,以及使用DNA嵌入剂9-氨基吖啶(9-AMA)人为破坏有丝分裂染色体的凝聚。为了估计使用9-AMA获得的制片上小染色体C带模式的多态性,有必要选择一个长度区间,该区间不得超过没有嵌入剂时中期染色体平均大小的三倍。9-AMA的使用提高了差异C带和OR带的分辨率以及荧光原位杂交(FISH)方法物理染色体图谱绘制的精度。在研究小染色体时,优化用于获取和处理染色体图像的计算机辅助方法尤为重要。所开发的用于分析植物基因组中染色体组织的综合方法被用于研究亚麻属(Linum L.)24个物种的核型。这首次使它们的染色体得以鉴定,此外,还在Syllinum组物种的核型中发现并研究了B染色体。根据核型的相似性,所研究的亚麻物种被分为八组,这与同时进行的随机扩增多态性DNA(RAPD)分析结果对这些物种的聚类情况一致。所研究亚麻物种的系统位置和系统发育关系得到了验证。我们的结果可以作为一个重要论据,支持为栽培亚麻(Linum usitatissimum L.)基因组测序制定专门计划的提议,栽培亚麻是小染色体物种的主要代表。

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