Institute of Structural Chemistry, Hungarian Academy of Sciences, Budapest H-1025, Hungary.
J Chem Phys. 2010 Jan 7;132(1):014506. doi: 10.1063/1.3268626.
Molecular dynamics simulations have been performed for liquid formamide using two different types of potential model (OPLS, Cordeiro). The structural results obtained from simulation were compared to experimental (x-ray and neutron diffraction measurements) outcomes. A generally good agreement for both models examined has been found, but in the hydrogen bonded region (2.9 A) the Cordeiro model shows a slightly better fit. Besides the evaluation of partial radial distribution functions, orientational correlation functions and energy distribution functions, describing the hydrogen bonded structure, have been calculated based on the statistical analysis of configurations, resulting into a new insight in the clustering properties and topology of hydrogen bonded network. It has been shown that in liquid formamide exists a continuous hydrogen bonded network and from the analysis of the distribution of small rings revealed the ring size distribution in liquid formamide. Our study resulted that the ring size distribution of the hydrogen bonded liquid formamide shows a broad distribution with a maximum around 11. It has been found that the topology in formamide is significantly different than in water.
使用两种不同类型的势能模型(OPLS、Cordeiro)对液态甲酰胺进行了分子动力学模拟。将模拟得到的结构结果与实验(X 射线和中子衍射测量)结果进行了比较。对于所检查的两种模型都发现了很好的一致性,但在氢键区域(2.9 A),Cordeiro 模型显示出了稍好的拟合度。除了评估部分径向分布函数外,还基于构型的统计分析计算了描述氢键结构的取向相关函数和能量分布函数,从而深入了解了氢键网络的聚类性质和拓扑结构。结果表明,在液态甲酰胺中存在连续的氢键网络,并且通过对小环分布的分析揭示了液态甲酰胺中环的大小分布。我们的研究表明,氢键液态甲酰胺的环大小分布具有广泛的分布,最大值约为 11。还发现,甲酰胺中的拓扑结构与水有显著差异。