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来自东方拟无枝酸菌的对羟苯甘氨酸合酶的限速催化步骤。

The rate-limiting catalytic steps of hydroxymandelate synthase from Amycolatopsis orientalis.

机构信息

Department of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, 3210 North Cramer Street, Milwaukee, Wisconsin 53211-3029, USA.

出版信息

Biochemistry. 2010 Mar 9;49(9):1998-2007. doi: 10.1021/bi901674q.

Abstract

Hydroxymandelate synthase (HMS) catalyzes the committed step in the formation of p-hydroxyphenylglycine, a recurrent substructure of polycyclic nonribosomal peptide antibiotics such as vancomycin. HMS has the same structural fold as and uses the same substrates as 4-hydroxyphenylpyruvate dioxygenase (HPPD) (4-hydroxyphenylpyruvate (HPP) and O(2)). Moreover, HMS catalyzes a very similar dioxygenation reaction to that of HPPD, adding the second oxygen atom to the benzylic position, rather than the aromatic C1 carbon of the substrate. The dissociation constant for HPP (59 microM) was measured under anaerobic conditions by titrating substrate with enzyme and monitoring the intensity of the weak (epsilon(475nm ) approximately 250 M(-1) cm(-1)) charge-transfer absorption band of the HMS.Fe(II).HPP complex. Pre-steady-state analysis indicates that evidence exists for the accumulation of three intermediates in a single turnover and the decay of the third is rate-limiting in multiple turnovers. The rate constants used to fit the data were k(1) = 1 x 10(5) M(-1) s(-1), k(2) = 250 s(-1), k(3) = 5 s(-1), and k(4) = 0.3 s(-1). However, the values for k(1) and k(2) could not be accurately measured due to both a prolonged mixing time for the HMS system that obscures observation at the early times (<10 ms) and the apparent high relative value of k(2). The third phase, k(3), is attributed to the formation of the product complex, and no kinetic isotope effect was observed on this step when the protons of the substrate's benzylic carbon were substituted with deuteriums, suggesting that hydroxylation is fast relative to the steps observed. The final and predominantly rate-limiting step shows a 3-fold decrease in the magnitude of the rate constant in deuterium oxide solvent, and a proton inventory for this step suggests the contribution of a single proton from the solvent environment.

摘要

羟甲基苯甘氨酸合酶(HMS)催化形成对羟苯甘氨酸的关键步骤,对羟苯甘氨酸是万古霉素等多环非核糖体肽类抗生素的常见重复结构。HMS 的结构折叠与 4-羟苯基丙酮酸双加氧酶(HPPD)相同,使用的底物也相同(4-羟苯基丙酮酸(HPP)和 O(2))。此外,HMS 催化的双氧化反应与 HPPD 非常相似,将第二个氧原子添加到基质的苄位,而不是基质的芳香 C1 碳上。在无氧条件下,通过用酶滴定底物并监测 HMS.Fe(II).HPP 配合物的弱电荷转移吸收带(ε(475nm)约为 250 M(-1) cm(-1))的强度,测量 HPP 的离解常数(59 microM)。预稳态分析表明,在单次周转中存在三个中间体积累的证据,并且在多次周转中,第三个中间体的衰减是限速的。用于拟合数据的速率常数分别为 k(1) = 1 x 10(5) M(-1) s(-1)、k(2) = 250 s(-1)、k(3) = 5 s(-1)和 k(4) = 0.3 s(-1)。然而,由于 HMS 体系的混合时间延长,掩盖了早期(<10 ms)的观察,并且 k(2)的值似乎很高,因此无法准确测量 k(1)和 k(2)的值。第三阶段 k(3)归因于产物配合物的形成,当基质的苄位碳原子的质子被氘取代时,在该步骤上没有观察到动力学同位素效应,这表明羟化相对于观察到的步骤是快速的。最后一个也是主要的限速步骤在重水溶剂中显示出速率常数的 3 倍下降,并且该步骤的质子库存表明溶剂环境中单个质子的贡献。

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