Tanaka Daisuke
Chemistry Research Laboratories, Dainippon Sumitomo Pharma Co., Ltd, Japan.
Yakugaku Zasshi. 2010 Mar;130(3):315-23. doi: 10.1248/yakushi.130.315.
Fragment-Based Drug Discovery (FBDD) has been recognized as a newly emerging lead discovery methodology that involves biophysical fragment screening and chemistry-driven fragment-to-lead stages. Although fragments, defined as structurally simple and small compounds (typically <300 Da), have not been employed in conventional high-throughput screening (HTS), the recent significant progress in the biophysical screening methods enables fragment screening at a practical level. The intention of FBDD primarily turns our attention to weakly but specifically binding fragments (hit fragments) as the starting point of medicinal chemistry. Hit fragments are then promoted to more potent lead compounds through linking or merging with another hit fragment and/or attaching functional groups. Another positive aspect of FBDD is ligand efficiency. Ligand efficiency is a useful guide in screening hit selection and hit-to-lead phases to achieve lead-likeness. Owing to these features, a number of successful applications of FBDD to "undruggable targets" (where HTS and other lead identification methods failed to identify useful lead compounds) have been reported. As a result, FBDD is now expected to complement more conventional methodologies. This review, as an introduction of the following articles, will summarize the fundamental concepts of FBDD and will discuss its advantages over other conventional drug discovery approaches.
基于片段的药物发现(FBDD)已被公认为一种新兴的先导化合物发现方法,它涉及生物物理片段筛选和化学驱动的片段到先导化合物阶段。尽管片段被定义为结构简单的小分子化合物(通常分子量小于300道尔顿),并未用于传统的高通量筛选(HTS),但生物物理筛选方法最近取得的重大进展使得片段筛选在实际应用中成为可能。FBDD的主要目的是将我们的注意力转向弱结合但特异性结合的片段(命中片段),作为药物化学的起点。然后通过与另一个命中片段连接或合并和/或连接官能团,将命中片段提升为更有效的先导化合物。FBDD的另一个积极方面是配体效率。配体效率在筛选命中片段和命中片段到先导化合物阶段是实现类先导化合物的有用指导。由于这些特点,已有许多关于FBDD成功应用于“不可成药靶点”(高通量筛选和其他先导化合物鉴定方法未能鉴定出有用先导化合物的靶点)的报道。因此,现在预计FBDD将补充更传统的方法。作为对以下文章的介绍,本综述将总结FBDD的基本概念,并讨论其相对于其他传统药物发现方法的优势。