Hanzawa Hiroyuki, Takizawa Takeshi
Exploratory Research Laboratories I, Daiichi Sankyo Co., Ltd, Japan.
Yakugaku Zasshi. 2010 Mar;130(3):325-33. doi: 10.1248/yakushi.130.325.
Nuclear magnetic resonance (NMR) is a versatile technique for the pharmaceutical industry. From organic chemistry to MRI, there are a number of applications of NMR. Among them, biomolecular NMR has been used for structure determination of biomolecules and analyzing the interaction between a target protein and its inhibitors. In the context of fragment-based drug discovery (FBDD), NMR has been known as a fragment screening technique, because NMR is good at detecting a weak binding compound in an accurate manner. Generally, the NMR technique for fragment screening is classified into two families: the ligand-based technique and the protein-based technique. The latter technique requires stable isotope labeled protein and also can be applied to a relatively small MW protein target. In the ligand-based technique such as saturation transfer difference (STD) and WaterLOGSY, only the NMR signals of the ligands are observed. The disadvantage of STD and WaterLOGSY is that the non-specific binding is also observed and a competition experiment is required in order to select the specific binding compound. Due to the difference in the consumption of the protein sample, the ligand-based technique has generally been used recently as a primary screening.
核磁共振(NMR)是制药行业中一种用途广泛的技术。从有机化学到磁共振成像(MRI),核磁共振有许多应用。其中,生物分子核磁共振已被用于生物分子的结构测定以及分析目标蛋白与其抑制剂之间的相互作用。在基于片段的药物发现(FBDD)背景下,核磁共振一直被视为一种片段筛选技术,因为核磁共振擅长以准确的方式检测弱结合化合物。通常,用于片段筛选的核磁共振技术分为两类:基于配体的技术和基于蛋白质的技术。后一种技术需要稳定同位素标记的蛋白质,并且也可应用于相对分子量较小的蛋白质靶点。在基于配体的技术中,如饱和转移差(STD)和水LOGSY,只观察配体的核磁共振信号。STD和水LOGSY的缺点是也会观察到非特异性结合,并且需要进行竞争实验以选择特异性结合化合物。由于蛋白质样品消耗的差异,基于配体的技术近来通常被用作初步筛选。