Poluéktova E U, Gagarina E Iu, Nezametdinova V Z, Shilovskiĭ I P, Rodionova S A, Prozorov A A
Genetika. 2010 Jan;46(1):33-43.
The nucleotide sequences of three DNA fragments (total size 30574 bp) of the plasmid p19 from the Bacillus subtilis 19 soil strain have been determined. Thirty open reading frames (ORFs) have been identified in these fragments. oriT of the plasmid has also been identified. As shown by the search for homologs of hypothetical protein products of these ORFs in databases, such homology exists for 18 ORFs. The protein products of nine ORFs can be assumed to have specific functions. Several ORFs were inactivated via insertional mutagenesis, and the conjugation capacity of the mutant plasmids was estimated. According to the data on homology of protein products and the results of ORF inactivation, regions of a total size of about 20 kb from the DNA fragments sequenced by us were inferred to belong to the tra region of p19. As follows from the analysis of the identified ORFs of the p19 tra region, it differs from the earlier described tra regions of other plasmids, irrespective of a certain similarity with the corresponding regions of plasmids of gram-positive bacteria from the genera Bacillus, Clostridium, and Listeria.
已测定了来自枯草芽孢杆菌19土壤菌株的质粒p19的三个DNA片段(总大小为30574 bp)的核苷酸序列。在这些片段中鉴定出了30个开放阅读框(ORF)。还鉴定出了该质粒的oriT。通过在数据库中搜索这些ORF的假设蛋白质产物的同源物发现,18个ORF存在这种同源性。九个ORF的蛋白质产物可被认为具有特定功能。通过插入诱变使几个ORF失活,并估计了突变体质粒的接合能力。根据蛋白质产物的同源性数据和ORF失活的结果,推断我们测序的DNA片段中总大小约为20 kb的区域属于p19的tra区域。从对已鉴定的p19 tra区域的ORF的分析可以看出,它与其他质粒先前描述的tra区域不同,尽管与芽孢杆菌属、梭菌属和李斯特菌属革兰氏阳性菌的质粒相应区域有一定相似性。