Sechenov Institute of Evolutionary Physiology and Biochemistry, Russian Academy of Sciences, St-Petersburg 194223, Russia.
Chem Biol Interact. 2010 Sep 6;187(1-3):153-6. doi: 10.1016/j.cbi.2010.03.039. Epub 2010 Mar 27.
It is known than the most potent homologues in various series of O,O-dialkylphosphates are the dibutyl or diamyl derivatives toward mammalian cholinesterases (ChEs) (both Acetyl- and Butyryl-ChEs), and the dimethyl or diethyl ones toward insect AChEs. To investigate the ChE interaction with organophosphorus inhibitors (OPIs) in more detail, we have performed in silico docking of the series of O,O-dialkylfluorophosphates into active center of different ChEs - both from mammals (human and mouse AChEs and horse BChE), and from insects (spring grain aphid AChE belonging to AChE-1 type, and housefly AChE belonging to AChE-2 type). According to the modeling results, one radical is directed to the anionic site W84, another to the acyl pocket. In addition to well-known residues 288 and 290 (Torpedo AChE sequence numbering), we showed an essential influence of residue 400 - a short alkyl residue in mammalian ChEs and phenylalanine in insect ChEs. Phenylalanine in this position creates sterical hindrance for proper orientation of the OPI molecule, which increases the distance between the catalytic serine gamma-oxygen and phosphorus, and decreases the angle of nucleophylic attack. This suggestion was supported by docking of dibutylfluorophosphate into the active center of AChEs with in silico mutations. Thus, we suggest both the angle of nucleophylic attack and the distance between the catalytic serine and phosphorus atom as measures of productivity of OPI binding.
已知在各种 O,O-二烷基磷酸酯系列中,对哺乳动物胆碱酯酶(ChE)(乙酰胆碱酯酶和丁酰胆碱酯酶)最有效的同系物是二丁基或二戊基衍生物,而对昆虫 AChE 则是二甲基或二乙基衍生物。为了更详细地研究 ChE 与有机磷抑制剂(OPI)的相互作用,我们对一系列 O,O-二烷基氟代磷酸酯进行了计算机对接,这些抑制剂进入了不同 ChE 的活性中心——既有来自哺乳动物的(人 AChE、鼠 AChE 和马 BChE),也有来自昆虫的(春粮蚜虫 AChE,属于 AChE-1 型,和家蝇 AChE,属于 AChE-2 型)。根据建模结果,一个自由基指向阴离子部位 W84,另一个指向酰基口袋。除了众所周知的残基 288 和 290(Torpedo AChE 序列编号)外,我们还显示了残基 400 的重要影响——在哺乳动物 ChE 中是短的烷基残基,而在昆虫 ChE 中是苯丙氨酸。该位置的苯丙氨酸为 OPI 分子的正确定向创造了空间位阻,增加了催化丝氨酸γ-氧和磷之间的距离,并降低了亲核攻击的角度。这一假设得到了通过计算机对接将二丁基氟代磷酸酯对接入 AChE 的活性中心并进行了计算机模拟突变的支持。因此,我们建议将亲核攻击的角度和催化丝氨酸与磷原子之间的距离作为 OPI 结合产物性的衡量标准。