Drug Discovery Department, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida 33612, USA.
Biochemistry. 2010 May 18;49(19):4276-82. doi: 10.1021/bi100365b.
Terreic acid is a metabolite with antibiotic properties produced by the fungus Aspergillus terreus. We found that terreic acid is a covalent inhibitor of the bacterial cell wall biosynthetic enzyme MurA from Enterobacter cloacae and Escherichia coli in vitro. The crystal structure of the MurA dead-end complex with terreic acid revealed that the quinine ring is covalently attached to the thiol group of Cys115, the molecular target of the antibiotic fosfomycin. Kinetic characterization established that the inactivation requires the presence of substrate UNAG (UDP-N-acetylglucosamine), proceeding with an inactivation rate constant k(inact) of 130 M(-1) s(-1). Although the mechanisms of inactivation are similar, fosfomycin is approximately 50 times more potent than terreic acid, and the structural consequences of covalent modification by these two inhibitors are fundamentally different. The MurA-fosfomycin complex exists in the closed enzyme conformation, with the Cys115-fosfomycin adduct buried in the active site. In contrast, the dead-end complex with terreic acid is open, is free of UNAG, and has the Cys115-terreic acid adduct solvent-exposed. It appears that terreic acid reacts with Cys115 in the closed, binary state of the enzyme, but that the resulting Cys115-terreic acid adduct imposes steric clashes in the active site. As a consequence, the loop containing Cys115 rearranges, the enzyme opens, and UNAG is released. The differential kinetic and structural characteristics of MurA inactivation by terreic acid and fosfomycin reflect the importance of noncovalent binding potential, even for covalent inhibitors, in ensuring inactivation efficiency and specificity.
土霉素酸是一种具有抗生素特性的代谢产物,由曲霉属真菌 Aspergillus terreus 产生。我们发现,土霉素酸是一种变构抑制剂,可与阴沟肠杆菌和大肠杆菌的细菌细胞壁生物合成酶 MurA 体外结合。MurA 与土霉素酸的末端复合物的晶体结构表明,奎宁环与抗生素磷霉素的分子靶标 Cys115 的巯基共价结合。动力学特征建立了失活需要底物 UNAG(UDP-N-乙酰葡萄糖胺)的存在,其失活速率常数 k(inact)为 130 M(-1) s(-1)。虽然失活机制相似,但磷霉素比土霉素酸约强 50 倍,并且这两种抑制剂的共价修饰的结构后果从根本上不同。MurA-磷霉素复合物存在于封闭酶构象中,Cys115-磷霉素加合物埋藏在活性部位。相比之下,与土霉素酸的末端复合物是开放的,没有 UNAG,并且 Cys115-土霉素酸加合物暴露在溶剂中。似乎土霉素酸在酶的封闭、二元状态下与 Cys115 反应,但由此产生的 Cys115-土霉素酸加合物在活性部位引起空间位阻。因此,包含 Cys115 的环重新排列,酶打开,UNAG 释放。MurA 被土霉素酸和磷霉素失活的差异动力学和结构特征反映了非共价结合潜力的重要性,即使对于共价抑制剂,也能确保失活效率和特异性。