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哺乳动物信号转导通路中的转录反馈促进了快速且可靠的蛋白质诱导。

Transcriptional feedbacks in mammalian signal transduction pathways facilitate rapid and reliable protein induction.

作者信息

Blüthgen Nils

机构信息

Institute of Theoretical Biology, Charite-Universitätsmedizin Berlin, Chariteplatz 1, 10117 Berlin, Germany.

出版信息

Mol Biosyst. 2010 Jul;6(7):1277-84. doi: 10.1039/c002598d. Epub 2010 May 7.

Abstract

Signal transduction pathways translate the cellular context into context-dependent expression of genes. In response to extracellular stimuli, proteins have to be up-regulated quickly and reliably. However, rapid and reliable control of target genes by a signalling pathway faces two major challenges. Firstly, swift changes in protein levels require short-lived proteins, which is not resource-optimal. Secondly, gene expression is an intrinsically noisy process, and fluctuations in the protein numbers are likely to reduce the functionality of the proteins. Mammalian signalling pathways frequently induce the transcription of their own inhibitors, resulting in negative feedback regulation. However, the functional role of these transcriptional feedbacks in mammalian signal transduction is unclear. Here, we analyse a mathematical model of a prototypical signalling pathway, the MAPK cascade, in order to investigate how transcriptional negative feedbacks may help to overcome the challenge of fast and reliable gene induction. It is shown that a transcriptional negative feedback helps to decouple protein stability and response times, thus allowing for swift up-regulation even of long-lived proteins. Furthermore, transcriptional negative feedbacks filter out the extrinsic component of gene expression noise, which dominates the uncertainty in gene expression in mammalian cells, thus making gene expression more reliable. Model analysis predicts that both goals can be achieved if (i) proteins and mRNAs of the feedback regulators and (ii) mRNAs of all targets are short-lived. These predictions are confirmed by large-scale measurements of mRNA and protein half-lives. Therefore, the design of the mammalian signal transduction network with its rapid feedback inhibition allows for swift and reliable target gene expression.

摘要

信号转导通路将细胞环境转化为基因的上下文依赖性表达。响应细胞外刺激时,蛋白质必须快速且可靠地上调。然而,信号通路对靶基因进行快速且可靠的调控面临两个主要挑战。首先,蛋白质水平的快速变化需要寿命短暂的蛋白质,这在资源利用上并非最优。其次,基因表达是一个本质上存在噪声的过程,蛋白质数量的波动可能会降低蛋白质的功能。哺乳动物的信号转导通路经常诱导自身抑制剂的转录,从而产生负反馈调节。然而,这些转录反馈在哺乳动物信号转导中的功能作用尚不清楚。在此,我们分析了一个典型信号转导通路——丝裂原活化蛋白激酶(MAPK)级联反应的数学模型,以研究转录负反馈如何有助于克服快速且可靠的基因诱导这一挑战。结果表明,转录负反馈有助于使蛋白质稳定性和响应时间解耦,从而即使对于寿命较长的蛋白质也能实现快速上调。此外,转录负反馈滤除了基因表达噪声的外在成分,该成分在哺乳动物细胞基因表达的不确定性中占主导地位,从而使基因表达更可靠。模型分析预测,如果(i)反馈调节因子的蛋白质和mRNA以及(ii)所有靶标的mRNA寿命短暂,那么这两个目标都可以实现。这些预测通过对mRNA和蛋白质半衰期的大规模测量得到了证实。因此,具有快速反馈抑制作用的哺乳动物信号转导网络的设计能够实现快速且可靠的靶基因表达。

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