Functional Genomics Unit, Institute of Genomics and Integrative Biology, Delhi, India.
Respirology. 2010 May;15(4):651-8. doi: 10.1111/j.1440-1843.2010.01757.x.
The role of beta2-adrenergic receptor (ADRB2) in pulmonary oxygenation has been ascertained during altitude acclimatization, physical performance and lung fluid clearance, but little is known about its association with high-altitude pulmonary oedema (HAPE), a non-cardiogenic pulmonary oedema.
In a case-control study, 110 unrelated HAPE patients (HAPE-p) and 143 unrelated HAPE-resistant (HAPE-r) controls matched on age and ethnicity were used to examine the association between eight single nucleotide polymorphisms (SNP) and disease. The eight SNP including three tag-SNP were genotyped from promoter and exonic regions of ADRB2. Robust methods for predicting geneotype-phenotype interactions, for example, multidimensional reduction (MDR) and moving-window haplotype analysis were applied.
The haplotypes from 46A/G and 79C/G SNP of ADRB2 were associated with HAPE. The MDR model depicting disease association through genotype-genotype and genotype-phenotype interaction included SNP 46A/G, 79C/G and 523C/A. Its haplotype 46G_79C_523C was significantly overrepresented in HAPE-r (P = 0.0001; chi(2) = 14.95; OR = 4.52; 95% CI: 1.98-10.3). The global haplotype test showed significant association with HAPE (LRchi(2) = 86.69, P < 0.0001). A moving-window analysis revealed that haplotype -367C/T_46A/G_79C/G differed significantly between HAPE-p and HAPE-r (LRchi(2) = 22.5, P = 0.002). The MDR model depicted SNP 46A/G, 79C/G and 523C/A as the best combination predicting disease. conclusions: The haplotypes of ADRB2 consisting of the SNP, 46A/G and 79C/G, have a greater power for predicting HAPE.
β2 肾上腺素能受体(ADRB2)在高原适应、体力活动和肺液清除方面的作用已得到确定,但对于高原性肺水肿(HAPE)这种非心源性肺水肿,其与疾病的关联却知之甚少。
在一项病例对照研究中,共纳入了 110 例无相关性 HAPE 患者(HAPE-p)和 143 例无相关性 HAPE 抗性患者(HAPE-r),按年龄和种族进行匹配,以检验 8 个单核苷酸多态性(SNP)与疾病之间的关联。通过启动子和 ADRB2 外显子区域对 8 个 SNP(包括 3 个标签 SNP)进行基因分型。采用多维缩减(MDR)和移动窗口单体型分析等稳健的基因-表型相互作用预测方法。
ADRB2 的 46A/G 和 79C/G SNP 的单体型与 HAPE 相关。通过基因型-基因型和基因型-表型相互作用来描述疾病关联的 MDR 模型包括 SNP 46A/G、79C/G 和 523C/A。其单体型 46G_79C_523C 在 HAPE-r 中显著过表达(P = 0.0001;卡方 = 14.95;OR = 4.52;95%CI:1.98-10.3)。全局单体型检验显示与 HAPE 显著相关(LRchi(2) = 86.69,P < 0.0001)。移动窗口分析显示 HAPE-p 和 HAPE-r 之间的单体型-367C/T_46A/G_79C/G 存在显著差异(LRchi(2) = 22.5,P = 0.002)。MDR 模型显示 SNP 46A/G、79C/G 和 523C/A 是预测疾病的最佳组合。
由 SNP 46A/G 和 79C/G 组成的 ADRB2 单体型对预测 HAPE 具有更大的效力。