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模-模耦合积分的近似解:在胞嘧啶及其氘代衍生物中的应用。

Approximate solution of the mode-mode coupling integral: Application to cytosine and its deuterated derivative.

机构信息

Department of Physics, Aligarh Muslim University, Aligarh, Uttar Pradesh 202002, India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2010 Oct 1;77(2):446-56. doi: 10.1016/j.saa.2010.06.015. Epub 2010 Jun 18.

Abstract

Ab initio Hartree-Fock (HF), density functional theory (DFT) and second-order Møller-Plesset (MP2) methods were used to perform harmonic and anharmonic calculations for the biomolecule cytosine and its deuterated derivative. The anharmonic vibrational spectra were computed using the vibrational self-consistent field (VSCF) and correlation-corrected vibrational self-consistent field (CC-VSCF) methods. Calculated anharmonic frequencies have been compared with the argon matrix spectra reported in literature. The results were analyzed with focus on the properties of anharmonic couplings between pair of modes. A simple and easy to use formula for calculation of mode-mode coupling magnitudes has been derived. The key element in present approach is the approximation that only interactions between pairs of normal modes have been taken into account, while interactions of triples or more are neglected. FTIR and Raman spectra of solid state cytosine have been recorded in the regions 400-4000 cm(-1) and 60-4000 cm(-1), respectively. Vibrational analysis and assignments are based on calculated potential energy distribution (PED) values.

摘要

采用从头算 Hartree-Fock(HF)、密度泛函理论(DFT)和二级 Møller-Plesset(MP2)方法对生物分子胞嘧啶及其氘代衍生物进行了谐和和非谐计算。采用振动自洽场(VSCF)和相关校正振动自洽场(CC-VSCF)方法计算了非谐振动光谱。计算得到的非谐频率与文献中报道的氩基质光谱进行了比较。结果主要分析了双模式之间的非谐耦合性质。推导出了一种简单易用的模式-模式耦合幅度计算公式。本方法的关键要素是近似只考虑了双模式之间的相互作用,而忽略了三模式或更多模式的相互作用。分别在 400-4000cm(-1) 和 60-4000cm(-1) 范围内记录了固态胞嘧啶的 FTIR 和拉曼光谱。振动分析和归属基于计算得到的势能分布(PED)值。

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