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解析人类基因组中配置重复假基因的基因的基因组特征和进化影响。

Insights into the genomic features and evolutionary impact of the genes configuring duplicated pseudogenes in human.

机构信息

Bioinformatics Centre, Bose Institute, Kolkata, India.

出版信息

FEBS Lett. 2010 Sep 24;584(18):4015-8. doi: 10.1016/j.febslet.2010.08.012. Epub 2010 Aug 12.

Abstract

Pseudogenes, regarded as 'genomic fossils', are DNA sequences resembling functional genes in perspective of sequence homology but completely non-functional. In this study, we explored the unique characteristic features of human genes, configuring classical duplicated pseudogenes. We found that progenitors of duplicated pseudogenes are characterized by a high expressivity, and ability to encode hub-proteins in association with a high evolutionary rate. Such unusual features are endorsed by longer protein length, elevated CpG content, and a high recombination rate. The non-functionalization of their duplicated copies can be attributed to the overabundance of gene paralog number in concert with functional redundancy.

摘要

假基因被视为“基因组化石”,是指在序列同源性方面类似于功能基因的 DNA 序列,但完全没有功能。在这项研究中,我们探索了人类基因的独特特征,构建了经典的复制假基因。我们发现,复制假基因的前体具有高表达性和编码枢纽蛋白的能力,同时具有较高的进化速率。这种不寻常的特征是由更长的蛋白质长度、更高的 CpG 含量和更高的重组率所支持的。它们的复制副本的非功能化可以归因于基因家族数量的过剩以及功能冗余。

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