Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 16610 Prague 6, Czech Republic.
J Phys Chem B. 2010 Sep 16;114(36):11934-41. doi: 10.1021/jp1054342.
Domains rich in cationic amino acids are ubiquitous in peptides with the ability to cross cell membranes, which is likely related to the binding of such polypeptides to anionic groups on the membrane surface. To shed more light on these interactions, we investigated specific interactions between basic amino acids and oligopeptides thereof and anions by means of electrophoretic experiments and molecular dynamics simulations. To this end, we measured the electrophoretic mobilities of arginine, lysine, tetraarginine, and tetralysine in sodium chloride and sodium sulfate electrolytes as a function of ionic strength. The mobility was found to be consistently lower in sodium sulfate than in sodium chloride at the same ionic strength. The decrease in mobility in sodium sulfate was greater for tetraarginine than for tetralysine and was larger for tetrapeptides compared to the corresponding free amino acids. On the basis of molecular dynamics simulations and Bjerrum theory, we rationalize these results in terms of enhanced association between the amino acid side chains and sulfate. Simulations also predict a greater affinity of sulfate to the guanidinium side chain groups of arginine than to the ammonium groups of lysine, as the planar guanidinium geometry allows simultaneous strong hydrogen bonding to two sulfate oxygens. We show that the sulfate binding to arginine, but not to lysine, is cooperative. These results are consistent with the greater decrease in the mobility of arginine compared to that of lysine upon addition of sulfate salt. The nonspecific mobility retardation by sulfate is ascribed to its electrostatic interaction with the cationic amino acid side chain groups.
富含阳离子氨基酸的结构域普遍存在于具有跨细胞膜能力的肽中,这可能与这些多肽与膜表面阴离子基团的结合有关。为了更深入地了解这些相互作用,我们通过电泳实验和分子动力学模拟研究了碱性氨基酸及其寡肽与阴离子之间的特定相互作用。为此,我们测量了精氨酸、赖氨酸、四精氨酸和四赖氨酸在氯化钠和硫酸钠电解液中的电泳迁移率作为离子强度的函数。在相同的离子强度下,我们发现硫酸钠中的迁移率始终低于氯化钠中的迁移率。在硫酸钠中的迁移率降低对于四精氨酸比对四赖氨酸更大,并且对于四肽比对相应的游离氨基酸更大。基于分子动力学模拟和 Bjerrum 理论,我们根据氨基酸侧链与硫酸盐之间增强的缔合来解释这些结果。模拟还预测硫酸盐与精氨酸的胍侧链基团的亲和力大于与赖氨酸的铵基团的亲和力,因为平面胍几何形状允许同时与两个硫酸盐氧强氢键合。我们表明,硫酸盐与精氨酸的结合是协同的,但与赖氨酸的结合不是协同的。这些结果与添加硫酸盐盐后精氨酸的迁移率比赖氨酸的迁移率下降更大是一致的。硫酸盐的非特异性迁移率延迟归因于其与阳离子氨基酸侧链基团的静电相互作用。