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深入研究铜绿假单胞菌羧酯酶 PA3859 的脂肪酸链长特异性:结构、生化和计算综合研究。

Insights into the fatty acid chain length specificity of the carboxylesterase PA3859 from Pseudomonas aeruginosa: A combined structural, biochemical and computational study.

机构信息

Istituto di Cristallografia, Consiglio Nazionale delle Ricerche, Area Science Park - Basovizza, S.S. 14, Km 163.5, I-34149 Trieste, Italy.

出版信息

Biochimie. 2010 Dec;92(12):1787-92. doi: 10.1016/j.biochi.2010.09.001. Epub 2010 Sep 17.

Abstract

The open reading frame PA3859 of Pseudomonas aeruginosa encodes an intracellular carboxylesterase belonging to a group of microbial enzymes (EC 3.1.1.1) that catalyze the hydrolysis of aliphatic and aromatic esters with a broad substrate specificity. With few exceptions, for this class of enzymes, belonging to the α/β-hydrolase fold superfamily, very little information is available regarding their biochemical activity and in vivo function. The X-ray crystal structure of recombinant PA3859 has been determined for two crystal forms (space groups P2(1) and P2(1)2(1)2). The kinetic properties of the enzyme were studied using p-nitrophenyl esters as substrates and data fitted to a surface dilution mixed micelle kinetic model. Enzymatic assays and computational docking simulations, pinpointed the enzyme's preference for esters of palmitic and/or stearic acids and provided insights into the enzyme-substrate favorable binding modes.

摘要

铜绿假单胞菌的开放阅读框 PA3859 编码一种细胞内羧酸酯酶,属于一组微生物酶(EC 3.1.1.1),能够催化具有广泛底物特异性的脂肪族和芳香族酯的水解。对于属于 α/β-水解酶折叠超家族的这类酶,除了少数例外,关于它们的生化活性和体内功能的信息非常有限。已经确定了两种晶体形式(空间群 P2(1) 和 P2(1)2(1)2)的重组 PA3859 的 X 射线晶体结构。使用对硝基苯酚酯作为底物研究了酶的动力学性质,并将数据拟合到表面稀释混合胶束动力学模型中。酶促测定和计算对接模拟确定了该酶对棕榈酸和/或硬脂酸酯的偏好,并深入了解了酶-底物的有利结合模式。

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