Minor Groove Interactions between Polymerase and DNA: More Essential to Replication than Watson-Crick Hydrogen Bonds?
作者信息
Morales Juan C, Kool Eric T
机构信息
Department of Chemistry, University of Rochester, Rochester, New York 14627.
出版信息
J Am Chem Soc. 1999 Feb 14;121(10):2323-2324. doi: 10.1021/ja983502+.
Abstract
摘要
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本文引用的文献
1
Aromatic Nonpolar Nucleosides as Hydrophobic Isosteres of Pyrimidine and Purine Nucleosides.
J Org Chem. 1994 Dec 1;59(24):7238-7242. doi: 10.1021/jo00103a013.
2
Highly Precise Shape Mimicry by a Difluorotoluene Deoxynucleoside, a Replication-Competent Substitute for Thymidine.
Angew Chem Int Ed Engl. 1997 Jan 7;36(24):2825-2828. doi: 10.1002/anie.199728251.
3
Structure and Base Pairing Properties of a Replicable Nonpolar Isostere for Deoxyadenosine.
J Org Chem. 1998;63(26):9652-9656. doi: 10.1021/jo9805100.
4
Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication.
J Am Chem Soc. 1997 Feb 26;119(8):2056-2057. doi: 10.1021/ja963718g.
5
C-Nucleosides Derived from Simple Aromatic Hydrocarbons.
Synlett. 1997 Apr 1;4:341-347. doi: 10.1055/s-1997-788.
6
Efficient replication between non-hydrogen-bonded nucleoside shape analogs.
Nat Struct Biol. 1998 Nov;5(11):950-4. doi: 10.1038/2925.
7
Inhibition of DNA polymerase reactions by pyrimidine nucleotide analogues lacking the 2-keto group.
Nucleic Acids Res. 1998 Apr 15;26(8):1863-9. doi: 10.1093/nar/26.8.1863.
8
Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal.
Nature. 1998 Jan 15;391(6664):304-7. doi: 10.1038/34693.
9
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.
Nature. 1998 Jan 15;391(6664):251-8. doi: 10.1038/34593.
10
Bi-stranded, multisite replication of a base pair between difluorotoluene and adenine: confirmation by 'inverse' sequencing.
Chem Biol. 1997 Dec;4(12):919-26. doi: 10.1016/s1074-5521(97)90300-8.
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