Formation of Stable DNA Loops by Incorporation of Nonpolar, Non-Hydrogen-Bonding Nucleoside Isosteres.
作者信息
Ren Xiao-Feng, Schweitzer Barbara A, Sheils Charles J, Kool Eric T
机构信息
Department of Chemistry, University of Rochester, Rochester, NY 14627 (USA).
出版信息
Angew Chem Int Ed Engl. 1996 Apr 19;35(7):743-746. doi: 10.1002/anie.199607431.
Abstract
摘要
相似文献
1
Formation of Stable DNA Loops by Incorporation of Nonpolar, Non-Hydrogen-Bonding Nucleoside Isosteres.
Angew Chem Int Ed Engl. 1996 Apr 19;35(7):743-746. doi: 10.1002/anie.199607431.
2
Aromatic Nonpolar Nucleosides as Hydrophobic Isosteres of Pyrimidine and Purine Nucleosides.
J Org Chem. 1994 Dec 1;59(24):7238-7242. doi: 10.1021/jo00103a013.
3
Varied Molecular Interactions at the Active Sites of Several DNA Polymerases: Nonpolar Nucleoside Isosteres as Probes.
J Am Chem Soc. 2000 Feb 16;122(6):1001-1007. doi: 10.1021/ja993464+.
4
Nonpolar isosteres of damaged DNA bases: effective mimicry of mutagenic properties of 8-oxopurines.
J Am Chem Soc. 2007 Jul 18;129(28):8836-44. doi: 10.1021/ja071970q. Epub 2007 Jun 26.
5
Mimicking the Structure and Function of DNA: Insights into DNA Stability and Replication.
Angew Chem Int Ed Engl. 2000 Mar;39(6):990-1009. doi: 10.1002/(sici)1521-3773(20000317)39:6<990::aid-anie990>3.0.co;2-0.
6
Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA.
J Am Chem Soc. 1995 Feb 22;117(7):1863-1872. doi: 10.1021/ja00112a001.
7
Functional hydrogen-bonding map of the minor groove binding tracks of six DNA polymerases.
Biochemistry. 2000 Oct 24;39(42):12979-88. doi: 10.1021/bi001578o.
8
Base pair hydrogen bonds are essential for proofreading selectivity by the human mitochondrial DNA polymerase.
J Biol Chem. 2008 May 23;283(21):14411-6. doi: 10.1074/jbc.M705006200. Epub 2007 Jul 24.
9
Probing the requirements for recognition and catalysis in Fpg and MutY with nonpolar adenine isosteres.
J Am Chem Soc. 2003 Dec 31;125(52):16235-42. doi: 10.1021/ja0374426.
10
Surprising repair activities of nonpolar analogs of 8-oxoG expose features of recognition and catalysis by base excision repair glycosylases.
J Am Chem Soc. 2012 Jan 25;134(3):1653-61. doi: 10.1021/ja208510m. Epub 2012 Jan 9.
引用本文的文献
1
Experimental Measurement of Aromatic Stacking Affinities in the Context of Duplex DNA.
J Am Chem Soc. 1996 Aug 28;118(34):8182-8183. doi: 10.1021/ja961733f.
2
Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA.
J Am Chem Soc. 2000 Feb 10;122(10):2213-2222. doi: 10.1021/ja9934854.
3
Naphthalene, Phenanthrene, and Pyrene as DNA Base Analogues: Synthesis, Structure, and Fluorescence in DNA.
J Am Chem Soc. 1996 Aug 21;118(33):7671-7678. doi: 10.1021/ja9612763.
4
Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication.
J Am Chem Soc. 1997 Feb 26;119(8):2056-2057. doi: 10.1021/ja963718g.
5
C-Nucleosides Derived from Simple Aromatic Hydrocarbons.
Synlett. 1997 Apr 1;4:341-347. doi: 10.1055/s-1997-788.
6
A sequential indium-mediated aldehyde allylation/palladium-catalyzed cross-coupling reaction in the synthesis of 2-deoxy-beta-C-aryl glycosides.
Org Lett. 2009 Aug 20;11(16):3734-7. doi: 10.1021/ol901353f.
7
Preorganization of DNA: Design Principles for Improving Nucleic Acid Recognition by Synthetic Oligonucleotides.
Chem Rev. 1997 Aug 5;97(5):1473-1488. doi: 10.1021/cr9603791.
8
Survey and summary: The applications of universal DNA base analogues.
Nucleic Acids Res. 2001 Jun 15;29(12):2437-47. doi: 10.1093/nar/29.12.2437.
本文引用的文献
1
Molecular Recognition by Circular Oligonucleotides. Strong Binding of Single-stranded DNA and RNA.
J Chem Soc Chem Commun. 1991;1991(17):1161-1163. doi: 10.1039/C39910001161.
2
Structural Effects in the Recognition of DNA by Circular Oligonucleotides.
J Am Chem Soc. 1992 Apr 1;114(9):3523-3527. doi: 10.1021/ja00035a056.
3
Solvent, pH, and Ionic Effects on the Binding of Single-Stranded DNA by Circular Oligodeoxynucleotides.
Bioorg Med Chem Lett. 1994 Apr 21;4(8):965-970. doi: 10.1016/S0960-894X(01)80664-8.
4
Very High Affinity DNA Recognition by Bicyclic and Cross-Linked Oligonucleotides.
J Am Chem Soc. 1995 Oct 1;117(42):10434-10442. doi: 10.1021/ja00147a004.
5
Aromatic Nonpolar Nucleosides as Hydrophobic Isosteres of Pyrimidine and Purine Nucleosides.
J Org Chem. 1994 Dec 1;59(24):7238-7242. doi: 10.1021/jo00103a013.
6
Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA.
J Am Chem Soc. 1995 Feb 22;117(7):1863-1872. doi: 10.1021/ja00112a001.
7
Recognition of Single-Stranded Nucleic Acids by Triplex Formation: The Binding of Pyrimidine-Rich Sequences.
J Am Chem Soc. 1994 Sep;116(19):8857-8858. doi: 10.1021/ja00098a075.
8
Modulation of oligonucleotide duplex and triplex stability via hydrophobic interactions.
Nucleic Acids Res. 1993 Dec 25;21(25):5909-15. doi: 10.1093/nar/21.25.5909.
9
Studies of DNA dumbbells. IV. Preparation and melting of a DNA dumbbell with the 16 base-pair sequence 5'G-T-A-T-C-C-C-T-C-T-G-G-A-T-A-C3' linked on the ends by dodecyl chains.
Biopolymers. 1993 Dec;33(12):1765-77. doi: 10.1002/bip.360331203.
10
Association of branched nucleic acids.
Nucleic Acids Symp Ser. 1993(29):97-9.
Zotero 插件