School of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, PR China.
Bioorg Med Chem Lett. 2010 Dec 1;20(23):7004-10. doi: 10.1016/j.bmcl.2010.09.116. Epub 2010 Sep 29.
The nociceptin/orphanin FQ receptor (NOP) has been implicated in a wide range of biological functions, including pain, anxiety, depression and drug abuse. Especially, its agonists have a great potential to be developed into anxiolytics. However, the crystal structure of NOP is still not available. In the present work, both structure-based and ligand-based modeling methods have been used to achieve a comprehensive understanding on 67N-substituted spiropiperidine analogues as NOP agonists. The comparative molecular-field analysis method was performed to formulate a reasonable 3D-QSAR model (cross-validated coefficient q(2)=0.819 and conventional r(2)=0.950), whose robustness and predictability were further verified by leave-eight-out, Y-randomization, and external test-set validations. The excellent performance of CoMFA to the affinity differences among these compounds was attributed to the contributions of electrostatic/hydrogen-bonding and steric/hydrophobic interactions, which was supported by the Surflex-Dock and CDOCKER molecular-docking simulations based on the 3D model of NOP built by the homology modeling method. The CoMFA contour maps and the molecular docking simulations were integrated to propose a binding mode for the spiropiperidine analogues at the binding site of NOP.
孤啡肽/强啡肽 FQ 受体(NOP)参与了广泛的生物学功能,包括疼痛、焦虑、抑郁和药物滥用。特别是,其激动剂具有很大的潜力被开发成抗焦虑药。然而,NOP 的晶体结构仍然不可用。在本工作中,基于结构和基于配体的建模方法都被用于对 67N-取代的螺哌啶类似物作为 NOP 激动剂进行全面的理解。比较分子场分析方法被用来制定一个合理的 3D-QSAR 模型(交叉验证系数 q(2)=0.819 和常规 r(2)=0.950),其稳健性和可预测性通过 8 出 1 外验证、Y-随机化和外部测试集验证进一步得到验证。CoMFA 对这些化合物亲和力差异的优异表现归因于静电/氢键和立体/疏水性相互作用的贡献,这得到了基于同源建模方法构建的 NOP 3D 模型的 Surflex-Dock 和 CDOCKER 分子对接模拟的支持。CoMFA 等高线图和分子对接模拟被整合起来,提出了螺哌啶类似物在 NOP 结合位点的结合模式。