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本文引用的文献

1
X-ray structure of perdeuterated diisopropyl fluorophosphatase (DFPase): perdeuteration of proteins for neutron diffraction.全氘代二异丙基氟磷酸酶(DFPase)的X射线结构:用于中子衍射的蛋白质全氘代化
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Apr 1;66(Pt 4):379-85. doi: 10.1107/S1744309110004318. Epub 2010 Mar 26.
2
Structural characterization of the catalytic calcium-binding site in diisopropyl fluorophosphatase (DFPase)--comparison with related beta-propeller enzymes.二异丙基氟磷酸酶(DFPase)催化钙结合位点的结构特征 - 与相关β-发夹酶的比较。
Chem Biol Interact. 2010 Sep 6;187(1-3):373-9. doi: 10.1016/j.cbi.2010.02.043. Epub 2010 Mar 3.
3
Reversed enantioselectivity of diisopropyl fluorophosphatase against organophosphorus nerve agents by rational design.通过合理设计,使二异丙基氟膦酸酯对有机磷神经毒剂的对映选择性逆转。
J Am Chem Soc. 2009 Dec 2;131(47):17226-32. doi: 10.1021/ja905444g.
4
A neutron crystallographic analysis of phosphate-free ribonuclease A at 1.7 A resolution.分辨率为1.7埃的无磷酸核糖核酸酶A的中子晶体学分析。
Acta Crystallogr D Biol Crystallogr. 2009 Sep;65(Pt 9):892-9. doi: 10.1107/S0907444909018885. Epub 2009 Aug 6.
5
Combined high-resolution neutron and X-ray analysis of inhibited elastase confirms the active-site oxyanion hole but rules against a low-barrier hydrogen bond.对受抑制弹性蛋白酶进行的高分辨率中子与X射线联合分析证实了活性位点氧负离子洞的存在,但排除了低势垒氢键的存在。
J Am Chem Soc. 2009 Aug 12;131(31):11033-40. doi: 10.1021/ja9028846.
6
Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules.广义X射线和中子晶体学分析:用于生物大分子的更精确和完整的结构
Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):567-73. doi: 10.1107/S0907444909011548. Epub 2009 May 15.
7
Rapid determination of hydrogen positions and protonation states of diisopropyl fluorophosphatase by joint neutron and X-ray diffraction refinement.通过联合中子和X射线衍射精修快速确定二异丙基氟磷酸酯酶的氢位置和质子化状态。
Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):713-8. doi: 10.1073/pnas.0807842106. Epub 2009 Jan 9.
8
Hydrogen location in stages of an enzyme-catalyzed reaction: time-of-flight neutron structure of D-xylose isomerase with bound D-xylulose.酶催化反应各阶段中的氢位置:结合D-木酮糖的D-木糖异构酶的飞行时间中子结构
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9
The catalytic mechanism of an aspartic proteinase explored with neutron and X-ray diffraction.利用中子和X射线衍射探索天冬氨酸蛋白酶的催化机制。
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10
Protein structures by spallation neutron crystallography.散裂中子晶体学解析的蛋白质结构
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二异丙基氟磷酸酶(DFPase)的中子结构与作用机制研究

Neutron structure and mechanistic studies of diisopropyl fluorophosphatase (DFPase).

作者信息

Chen Julian C H, Mustyakimov Marat, Schoenborn Benno P, Langan Paul, Blum Marc Michael

机构信息

Institute of Biophysical Chemistry, Goethe University Frankfurt, Max-von-Laue-Strasse 9, 60438 Frankfurt, Germany.

出版信息

Acta Crystallogr D Biol Crystallogr. 2010 Nov;66(Pt 11):1131-8. doi: 10.1107/S0907444910034013. Epub 2010 Oct 20.

DOI:10.1107/S0907444910034013
PMID:21041927
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2967418/
Abstract

Diisopropyl fluorophosphatase (DFPase) is a calcium-dependent phosphotriesterase that acts on a variety of highly toxic organophosphorus compounds that act as inhibitors of acetylcholinesterase. The mechanism of DFPase has been probed using a variety of methods, including isotopic labelling, which demonstrated the presence of a phosphoenzyme intermediate in the reaction mechanism. In order to further elucidate the mechanism of DFPase and to ascertain the protonation states of the residues and solvent molecules in the active site, the neutron structure of DFPase was solved at 2.2 Å resolution. The proposed nucleophile Asp229 is deprotonated, while the active-site solvent molecule W33 was identified as water and not hydroxide. These data support a mechanism involving direct nucleophilic attack by Asp229 on the substrate and rule out a mechanism involving metal-assisted water activation. These data also allowed for the re-engineering of DFPase through rational design to bind and productively orient the more toxic S(P) stereoisomers of the nerve agents sarin and cyclosarin, creating a modified enzyme with enhanced overall activity and significantly increased detoxification properties.

摘要

二异丙基氟磷酸酶(DFPase)是一种钙依赖性磷酸三酯酶,作用于多种作为乙酰胆碱酯酶抑制剂的剧毒有机磷化合物。已使用多种方法探究了DFPase的作用机制,包括同位素标记,该方法证明了反应机制中存在磷酰酶中间体。为了进一步阐明DFPase的作用机制并确定活性位点中残基和溶剂分子的质子化状态,以2.2 Å的分辨率解析了DFPase的中子结构。所提出的亲核试剂天冬氨酸229去质子化,而活性位点溶剂分子W33被鉴定为水而非氢氧根。这些数据支持了一种机制,即天冬氨酸229对底物进行直接亲核攻击,排除了涉及金属辅助水活化的机制。这些数据还允许通过合理设计对DFPase进行重新改造,以结合并有效定向神经毒剂沙林和环沙林毒性更强的S(P)立体异构体,从而创建一种具有增强的整体活性和显著提高解毒特性的改良酶。