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遗传 SUM 调控网络的非线性微分方程模型的干扰分析。

Disturbance analysis of nonlinear differential equation models of genetic SUM regulatory networks.

机构信息

Department of Mechanical Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong.

出版信息

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jan-Mar;8(1):253-9. doi: 10.1109/TCBB.2010.19.

Abstract

Noise disturbances and time delays are frequently met in cellular genetic regulatory systems. This paper is concerned with the disturbance analysis of a class of genetic regulatory networks described by nonlinear differential equation models. The mechanisms of genetic regulatory networks to amplify (attenuate) external disturbance are explored, and a simple measure of the amplification (attenuation) level is developed from a nonlinear robust control point of view. It should be noted that the conditions used to measure the disturbance level are delay-independent or delay-dependent, and are expressed within the framework of linear matrix inequalities, which can be characterized as convex optimization, and computed by the interior-point algorithm easily. Finally, by the proposed method, a numerical example is provided to illustrate how to measure the attenuation of proteins in the presence of external disturbances.

摘要

在细胞遗传调控系统中经常会遇到噪声干扰和时滞问题。本文主要研究了一类由非线性微分方程模型描述的遗传调控网络的干扰分析。本文探讨了遗传调控网络对外界干扰进行放大(衰减)的机制,并从非线性鲁棒控制的角度提出了一种简单的放大(衰减)水平的度量方法。需要注意的是,用于度量干扰水平的条件是时不变或时变的,并且是在线性矩阵不等式的框架内表示的,可以将其表示为凸优化问题,并通过内点算法轻松计算。最后,通过所提出的方法,提供了一个数值示例来说明如何在存在外部干扰的情况下测量蛋白质的衰减。

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