Rush Christina L, Schüttelkopf Alexander W, Hurtado-Guerrero Ramon, Blair David E, Ibrahim Adel F M, Desvergnes Stéphanie, Eggleston Ian M, van Aalten Daan M F
Division of Molecular Microbiology, College of Life Sciences, University of Dundee, Dundee DD15EH, Scotland.
Chem Biol. 2010 Dec 22;17(12):1275-81. doi: 10.1016/j.chembiol.2010.07.018.
Natural products are often large, synthetically intractable molecules, yet frequently offer surprising inroads into previously unexplored chemical space for enzyme inhibitors. Argifin is a cyclic pentapeptide that was originally isolated as a fungal natural product. It competitively inhibits family 18 chitinases by mimicking the chitooligosaccharide substrate of these enzymes. Interestingly, argifin is a nanomolar inhibitor of the bacterial-type subfamily of fungal chitinases that possess an extensive chitin-binding groove, but does not inhibit the much smaller, plant-type enzymes from the same family that are involved in fungal cell division and are thought to be potential drug targets. Here we show that a small, highly efficient, argifin-derived, nine-atom fragment is a micromolar inhibitor of the plant-type chitinase ChiA1 from the opportunistic pathogen Aspergillus fumigatus. Evaluation of the binding mode with the first crystal structure of an A. fumigatus plant-type chitinase reveals that the compound binds the catalytic machinery in the same manner as observed for argifin with the bacterial-type chitinases. The structure of the complex was used to guide synthesis of derivatives to explore a pocket near the catalytic machinery. This work provides synthetically tractable plant-type family 18 chitinase inhibitors from the repurposing of a natural product.
天然产物往往是大型的、难以通过合成手段处理的分子,但它们常常能为酶抑制剂开拓出令人惊讶的、进入此前未被探索的化学空间的途径。阿吉芬是一种环状五肽,最初作为真菌天然产物被分离出来。它通过模拟这些酶的几丁寡糖底物来竞争性抑制18家族几丁质酶。有趣的是,阿吉芬是具有广泛几丁质结合槽的真菌几丁质酶细菌型亚家族的纳摩尔级抑制剂,但不抑制来自同一家族的、参与真菌细胞分裂且被认为是潜在药物靶点的小得多的植物型酶。在此,我们表明,一个由阿吉芬衍生而来的、高效的九原子小片段是机会性致病真菌烟曲霉的植物型几丁质酶ChiA1的微摩尔级抑制剂。对烟曲霉植物型几丁质酶首个晶体结构的结合模式评估表明,该化合物与细菌型几丁质酶结合催化机制的方式相同。复合物的结构被用于指导衍生物的合成,以探索催化机制附近的一个口袋。这项工作通过对一种天然产物的重新利用,提供了易于合成的植物型18家族几丁质酶抑制剂。