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首次使用从粗粒粒子到原子的逆向映射,对小角散射实验数据进行多尺度逆向蒙特卡罗建模的示例。

First example of multi-scale reverse Monte Carlo modeling for small-angle scattering experimental data using reverse mapping from coarse-grained particles to atoms.

机构信息

Department of Applied Physics, National Defense Academy, Yokosuka 239-8686, Japan.

出版信息

J Phys Condens Matter. 2010 Oct 13;22(40):404215. doi: 10.1088/0953-8984/22/40/404215. Epub 2010 Sep 22.

DOI:10.1088/0953-8984/22/40/404215
PMID:21386576
Abstract

We propose a new method for multi-scale reverse Monte Carlo (RMC) modeling of small-angle scattering data using reverse mapping from coarse-grained particles to atoms in cases where scale separation cannot be assumed. For efficient RMC analysis for small-angle scattering data, it is important to determine a large scale structure with the lowest possible computing cost. In order to find this large scale structure, a method using coarse-grained particles instead of atoms is suitable. As our first example, we examine the structure of expanded fluid Hg near the critical point. For this system, small-angle x-ray scattering (SAXS) data and wide-angle x-ray diffraction data (XRD) are observed in the same thermodynamic state. First, RMC analysis using coarse-grained particles for SAXS data is performed. Second, RMC analysis for SAXS and XRD data is performed with the replacement of a coarse-grained particle by an ad hoc cluster of several Hg atoms. In the present study, we have determined that the size of one coarse-grained particle corresponds to ten Hg atoms. The number density for the coarse-grained particles is set to one-tenth the actual number density of atoms and the cutoff length is three times (6.9 Å) that of Hg atoms (2.3 Å). As a result, this approach is found to be successful and the computing cost of RMC analysis can be reduced.

摘要

我们提出了一种新的方法,用于在不能假设尺度分离的情况下,通过从粗粒粒子到原子的反向映射,对小角散射数据进行多尺度反蒙特卡罗(RMC)建模。为了对小角散射数据进行有效的 RMC 分析,重要的是用尽可能低的计算成本确定大尺度结构。为了找到这个大尺度结构,使用粗粒粒子而不是原子的方法是合适的。作为我们的第一个例子,我们研究了临界点附近膨胀液体汞的结构。对于这个系统,在相同的热力学状态下观察到小角 X 射线散射(SAXS)数据和宽角 X 射线衍射(XRD)数据。首先,对 SAXS 数据进行使用粗粒粒子的 RMC 分析。其次,通过用几个汞原子的特定簇代替粗粒粒子,对 SAXS 和 XRD 数据进行 RMC 分析。在本研究中,我们确定一个粗粒粒子的大小对应于十个汞原子。粗粒粒子的数密度设置为实际原子数密度的十分之一,截止长度是汞原子的三倍(6.9 Å)(2.3 Å)。结果表明,这种方法是成功的,可以降低 RMC 分析的计算成本。

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