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砷酸与磷酸与水分子和碱/碱土金属阳离子相互作用的比较。

Comparison of arsenic acid with phosphoric acid in the interaction with a water molecule and an alkali/alkaline-earth metal cation.

机构信息

Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, Namgu, Pohang, Korea.

出版信息

J Phys Chem A. 2011 Oct 20;115(41):11355-61. doi: 10.1021/jp2051245. Epub 2011 Sep 16.

Abstract

Recently, Wolfe-Simon has discovered a bacterium which is able to survive using arsenic(V) rather than phosphorus(V) in its DNA. Thus it is important to investigate some important structural and chemical similarities and dissimilarities between phosphate and arsenate. We compared the monohydrated structures and the alkali/alkaline-earth metal (Na(+), K(+), Mg(2+) and Ca(2+)) complexes of the arsenic acid/anions with those of the phosphoric acid/anions [i.e., H(m)PO(4)(-(3-m)) vs H(m)AsO(4)(-(3-m)) (m = 1-3)]. We carried out geometry optimization along with harmonic frequency calculations using ab initio calculations. Despite the increased van der Waals radius of As, the hydrated structures of both P and As systems show very close similarity (within 0.25 Å in the P/As···O(water) distance and within a few kJ/mol in binding energy) because of the increased induction energies by more polar arsenic acid/anons and slightly increased dispersion energy by a larger size of the As atom. In the metal complexes, the arsenic acid has a slightly larger binding distance (by 0.07-1.0 Å) and weaker binding energy because the As(V) ion has a slightly larger radius than the P(V) ion, and the electrostatic interaction is the dominating feature in these systems.

摘要

最近,沃尔夫-西蒙发现了一种能够在其 DNA 中使用砷(V)而不是磷(V)生存的细菌。因此,研究磷酸盐和砷酸盐之间的一些重要的结构和化学相似性和差异性非常重要。我们比较了砷酸/阴离子的一水合物结构和碱/碱土金属(Na(+)、K(+)、Mg(2+)和 Ca(2+))配合物与磷酸/阴离子的一水合物结构和碱/碱土金属(Na(+)、K(+)、Mg(2+)和 Ca(2+))配合物[即 H(m)PO(4)(-(3-m)) 与 H(m)AsO(4)(-(3-m))(m = 1-3)]。我们使用从头算计算进行了几何优化和简谐频率计算。尽管砷的范德华半径增加了,但由于更极性的砷酸/阴离子增加了诱导能,并且由于砷原子的尺寸略大,略微增加了色散能,因此 P 和 As 系统的水合结构非常相似(在 P/As···O(water)距离上相差 0.25 Å 以内,结合能相差几个 kJ/mol 以内)。在金属配合物中,砷酸的结合距离(大 0.07-1.0 Å)和结合能稍弱,因为 As(V)离子的半径略大于 P(V)离子,静电相互作用是这些体系中的主要特征。

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