Center for Molecular Modeling, Ghent University, Technologiepark 903, B-9052 Zwijnaarde, Belgium.
Phys Chem Chem Phys. 2011 Nov 7;13(41):18638-46. doi: 10.1039/c1cp21452g. Epub 2011 Sep 16.
The calculation of the g tensor of the main (+)NH(3)-˙CH-COO(-) radiation-induced radical in solid-state α-glycine presents a real challenge to computational methods. Density functional calculations of this spectroscopic property struggle with its small anisotropy and the zwitterionic nature of the amino acids in the crystal of this seemingly simple system. Here, several factors influencing the calculated g tensor are examined by comparing with experimental data. The extent of the molecular environment is varied in both a cluster and a periodic approach and dynamic calculations are performed to account for temperature effects. The latter does not necessarily lead to a better agreement with experiment than a static calculation. Application of a periodic approach is straightforward, but an all-electron scheme clearly is favorable. In a cluster approach, the selected basis set and density functional are of less importance, provided a hybrid functional is used to prevent cluster boundary effects. The applied spin-orbit coupling operators and proper treatment of the gauge origin of the magnetic vector potential also seem to be less critical than in other, similar molecular systems. But a careful selection of the cluster size proves to be essential for this glycine radical system. The calculated g tensor varies significantly with increasing cluster size, yielding only a good agreement with experiment when 5-7 glycine molecules in the immediate environment of the central glycine radical are incorporated. Further expansion of the cluster size can even lead to an essentially incorrect description of the radical in the condensed phase, indicating that bigger clusters can become unbalanced.
在固态α-甘氨酸中,对主(+)NH(3)-˙CH-COO(-)辐射诱导自由基的 g 张量的计算对计算方法来说是一个真正的挑战。对这种光谱性质的密度泛函计算在其小各向异性和晶体中氨基酸的两性离子性质方面存在困难,尽管该系统看似简单。在这里,通过与实验数据进行比较,检查了影响计算 g 张量的几个因素。在簇和周期性方法中都改变了分子环境的范围,并进行了动力学计算以考虑温度效应。后者并不一定比静态计算更能与实验吻合。周期性方法的应用很简单,但全电子方案显然更有利。在簇方法中,所选的基组和密度泛函的重要性较小,只要使用混合泛函来防止簇边界效应即可。自旋轨道耦合算符的应用和磁向量势的规范原点的正确处理似乎也不像在其他类似的分子系统中那样关键。但是,对于甘氨酸自由基体系,仔细选择簇的大小被证明是必不可少的。计算的 g 张量随簇的大小显著变化,只有在包含中央甘氨酸自由基附近的 5-7 个甘氨酸分子时,才能与实验很好地吻合。进一步扩大簇的大小甚至可能导致对凝聚相中自由基的基本不正确描述,这表明更大的簇可能变得不平衡。