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二氯苯甲醛异构体晶体结构中的分子间相互作用及意外的同构现象

Intermolecular interactions and unexpected isostructurality in the crystal structures of the dichlorobenzaldehyde isomers.

作者信息

Solanko Katarzyna A, Bond Andrew D

机构信息

Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, Odense, DK-5230, Denmark.

出版信息

Acta Crystallogr B. 2011 Oct;67(Pt 5):437-45. doi: 10.1107/S0108768111035786. Epub 2011 Sep 16.

DOI:10.1107/S0108768111035786
PMID:21931213
Abstract

The crystal structures of the six dichlorobenzaldehyde isomers, four of them newly determined, are analyzed in terms of the geometry and energies of their intermolecular interactions, quantified using the semi-classical density sums (SCDS-PIXEL) method. A consistent feature in all six structures is molecular stacks propagating along a short crystallographic axis of ca 3.8 Å. The stacks have a closely comparable geometry in each isomer, but the interaction energies between stacked molecules are variable on account of the differing relative positions of the Cl substituents. In the majority of the isomers the stacking interactions are the most stabilizing in the structure. Exceptions are the 2,4- and 3,5-isomers, where more stabilizing interactions are made between stacks. In general, the most stabilizing non-stacking intermolecular interactions in the structures are those involving C-H...O contacts. Observed motifs based on Cl...Cl interactions appear to be largely imposed by the constraints of other more stabilizing intermolecular interactions. The isomeric series displays the following noteworthy features: (i) the 2,3- and 2,6-isomers are isostructural despite having different orientations of the Cl and aldehyde functionalities; (ii) the 2,5-isomer exhibits whole-molecule disorder; (iii) the 2,5- and 3,5-isomers have more than one molecule in the crystallographic asymmetric unit (Z' > 1). These features in particular are considered on the basis of the intermolecular interaction energies.

摘要

通过半经典密度和(SCDS-PIXEL)方法对六种二氯苯甲醛异构体(其中四种为新测定的)的晶体结构进行了分析,分析内容包括其分子间相互作用的几何结构和能量。所有六种结构的一个一致特征是分子沿约3.8 Å的短晶轴传播形成分子堆积。每种异构体中堆积的几何结构相近,但由于Cl取代基的相对位置不同,堆积分子之间的相互作用能有所变化。在大多数异构体中,堆积相互作用在结构中最稳定。例外的是2,4-和3,5-异构体,其中堆积之间形成了更稳定的相互作用。一般来说,结构中最稳定的非堆积分子间相互作用是涉及C-H...O接触的那些。基于Cl...Cl相互作用观察到的基序似乎在很大程度上是由其他更稳定的分子间相互作用的限制所决定的。该异构体系列具有以下值得注意的特征:(i)2,3-和2,6-异构体尽管Cl和醛官能团的取向不同,但它们是同构的;(ii)2,5-异构体表现出全分子无序;(iii)2,5-和3,5-异构体在晶体学不对称单元中有不止一个分子(Z' > 1)。特别是基于分子间相互作用能对这些特征进行了考虑。

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