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拟南芥、水稻、杨树、高粱和葡萄中 GT14/GT14 样基因家族的比较分析。

Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis.

机构信息

Biosciences Division and BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

出版信息

Plant Sci. 2011 Dec;181(6):688-95. doi: 10.1016/j.plantsci.2011.01.021. Epub 2011 Feb 17.

Abstract

Glycosyltransferase family14 (GT14) belongs to the glycosyltransferase (GT) superfamily that plays important roles in the biosynthesis of cell walls, the most abundant source of cellulosic biomass for bioethanol production. It has been hypothesized that DUF266 proteins are a new class of GTs related to GT14. In this study, we identified 62 GT14 and 106 DUF266 genes (named GT14-like herein) in Arabidopsis, Oryza, Populus, Sorghum and Vitis. Our phylogenetic analysis separated GT14 and GT14-like genes into two distinct clades, which were further divided into eight and five groups, respectively. Similarities in protein domain, 3D structure and gene expression were uncovered between the two phylogenetic clades, supporting the hypothesis that GT14 and GT14-like genes belong to one family. Therefore, we proposed a new family name, GT14/GT14-like family that combines both subfamilies. Variation in gene expression and protein subcellular localization within the GT14-like subfamily were greater than those within the GT14 subfamily. One-half of the Arabidopsis and Populus GT14/GT14-like genes were found to be preferentially expressed in stem/xylem, indicating that they are likely involved in cell wall biosynthesis. This study provided new insights into the evolution and functional diversification of the GT14/GT14-like family genes.

摘要

糖基转移酶家族 14(GT14)属于糖基转移酶(GT)超家族,在细胞壁生物合成中发挥重要作用,细胞壁是生物乙醇生产中最丰富的纤维素生物质来源。人们假设 DUF266 蛋白是与 GT14 相关的新型 GT 家族。在这项研究中,我们在拟南芥、水稻、杨树、高粱和葡萄中鉴定了 62 个 GT14 和 106 个 DUF266 基因(此处称为 GT14 样基因)。我们的系统发育分析将 GT14 和 GT14 样基因分为两个不同的分支,这两个分支进一步分为八个和五个组。两个系统发育分支之间的蛋白质结构域、3D 结构和基因表达相似性揭示了它们属于同一家族的假说。因此,我们提出了一个新的家族名称 GT14/GT14 样家族,它结合了两个亚家族。GT14 样亚家族内的基因表达和蛋白亚细胞定位的变异性大于 GT14 亚家族内的变异性。拟南芥和杨树的一半 GT14/GT14 样基因被发现优先在茎/木质部表达,这表明它们可能参与细胞壁生物合成。这项研究为 GT14/GT14 样家族基因的进化和功能多样化提供了新的见解。

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