Division of Theoretical Chemistry and Biology, Royal Institute of Technology, AlbaNova University Centre, 106 91 Stockholm, Sweden.
Carbohydr Res. 2011 Nov 29;346(16):2595-602. doi: 10.1016/j.carres.2011.09.007. Epub 2011 Sep 16.
The interaction between para-crystalline cellulose and the cross-linking glycan xyloglucan (XG) plays a central role for the strength and extensibility of plant cell walls. The coating of XGs on cellulose surfaces is believed to be one of the most probable interaction patterns. In this work, the effects of explicit water and side chain variation on the adsorption of XGs on cellulose are investigated by means of atomistic molecular dynamics simulations. The adsorption properties are studied in detail for three XGs on cellulose Iβ 1-10 surface in aqueous environment, namely GXXXGXXXG, GXXLGXXXG, and GXXFGXXXG, which differ in the length and composition of one side chain. Our work shows that when water molecules are included in the theoretical model, the total interaction energies between the adsorbed XGs and cellulose are considerably smaller than in vacuo. Furthermore, in water environment the van der Waals interactions prevail over the electrostatic interactions in the adsorption. Variation in one side chain does not have significant influence on the interaction energy and the binding affinity, but does affect the equilibrium structural properties of the adsorbed XGs to facilitate the interaction between both the backbone and the side chain residues with the cellulose surface. Together, this analysis provides new insights into the nature of the XG-cellulose interaction, which helps to further refine current molecular models of the composite plant cell wall.
无定形纤维素与交联聚糖木葡聚糖 (XG) 之间的相互作用对植物细胞壁的强度和延展性起着核心作用。XG 在纤维素表面的涂层被认为是最有可能的相互作用模式之一。在这项工作中,通过原子分子动力学模拟研究了明确的水和侧链变化对 XG 在纤维素上吸附的影响。在水相环境中,详细研究了三种 XG(GXXXGXXXG、GXXLGXXXG 和 GXXFGXXXG)在纤维素 Iβ 1-10 表面上的吸附特性,它们在一个侧链的长度和组成上有所不同。我们的工作表明,当将水分子包含在理论模型中时,吸附的 XG 与纤维素之间的总相互作用能明显小于真空状态。此外,在水相环境中,范德华相互作用在吸附中超过静电相互作用。一个侧链的变化对相互作用能和结合亲和力没有显著影响,但会影响吸附 XG 的平衡结构特性,从而促进主链和侧链残基与纤维素表面之间的相互作用。总的来说,这种分析为 XG-纤维素相互作用的本质提供了新的见解,有助于进一步完善复合植物细胞壁的现有分子模型。