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6-氯-2-氧代吲哚:X射线及密度泛函理论计算研究

6-Chloro-2-oxindole: X-ray and DFT-calculated study.

作者信息

Hachuła Barbara, Zerzucha Piotr, Zubko Maciej, Kusz Joachim

机构信息

Institute of Chemistry, University of Silesia, 14th Bankowa Street, 40-006 Katowice, Poland.

出版信息

Acta Crystallogr C. 2011 Oct;67(Pt 10):o413-6. doi: 10.1107/S0108270111038005. Epub 2011 Sep 29.

Abstract

The molecule of the title compound (systematic name: 6-chloroindolin-2-one), C(8)H(6)ClNO, is almost planar, with a dihedral angle of 1.13 (9)° between the planes of the constituent pyrrolidine and benzene rings. Centrosymmetric dimers are formed in the crystal structure by N-H···O hydrogen bonds, and these dimers are additionally linked by Cl···Cl and C-H···O interactions. Density functional theory (DFT) calculations at the B3LYP/6-31 G(d,p) level of theory were used to optimize the molecular structure and the geometry was best reproduced by optimization of two interacting molecules. The bond orders in the molecule, estimated using the natural bond orbitals (NBO) formalism, are consistent with the observed bond lengths. In particular, the contribution of the lone pair of electrons on the N atom to the N-C bond in the N-C=O group is revealed. The measured IR spectrum of the compound shows a red shift of the N-H stretching frequency compared with the free molecule, due to the formation of the hydrogen bonds.

摘要

标题化合物(系统名称:6-氯吲哚啉-2-酮)C₈H₆ClNO的分子几乎呈平面状,其组成的吡咯烷环和苯环平面之间的二面角为1.13(9)°。晶体结构中通过N-H···O氢键形成中心对称二聚体,并且这些二聚体还通过Cl···Cl和C-H···O相互作用相连。采用密度泛函理论(DFT)在B3LYP/6-31 G(d,p)理论水平下进行计算以优化分子结构,通过优化两个相互作用的分子能最佳地再现其几何结构。使用自然键轨道(NBO)形式主义估算的分子中的键级与观察到的键长一致。特别揭示了N原子上的孤对电子对N-C=O基团中N-C键的贡献。该化合物的实测红外光谱表明,由于氢键的形成,与游离分子相比,N-H伸缩频率发生了红移。

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