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现在是否应该考虑将基因芯片检测作为常规检测?

Is gene array testing to be considered routine now?

机构信息

NSAB Foundation, Pittsburgh, USA, and Samsung Cancer Research Institute, Seoul, South Korea.

出版信息

Breast. 2011 Oct;20 Suppl 3:S87-91. doi: 10.1016/S0960-9776(11)70301-0.


DOI:10.1016/S0960-9776(11)70301-0
PMID:22015300
Abstract

BACKGROUND: There are five multi-gene expression based prognostic tests for breast cancer offered as reference lab tests - Mammaprint, MapQuant Dx, OncotypeDx, PAM50 Breast Cancer Intrinsic Subtype Classifier, and Theros Breast Cancer Index. Each claims to provide additional prognostic information beyond conventional prognostic markers and to aid in determining who should receive systemic therapy. Evidence for their clinical utility was reviewed to determine whether any of them should be considered as routine clinical test. METHODS: Peer reviewed publications, meeting abstracts, and information provided by company web sites have been reviewed to compile information regarding their clinical utility according to the following criteria; (1) Analytical validity and regulatory approval of the reference lab test. (2) Level of evidence for clinical utility. (3) Whether published evidences support prognostic and/or predictive claim. RESULTS: While published evidences for clinical claims for OncotypeDx and Mammaprint used reference lab tests, and the supporting evidences for other tests come from academic assays before being converted to reference lab tests, results from two large randomized clinical trials testing the clinical utility of OncotypeDx and Mammaprint are still several years away and until that time none of the markers would reach level I evidence by Marker Utility Grading System. However Oncotype Dx has reached a level IB evidence according to Simon modification to Marker Utility Grading System. Therefore OncotypeDx may be considered for routine clinical use as an adjunct to clinical and pathological information and has been incorporated into clinical guidelines in USA. While Mammaprint, MapQuantDx, and PAM50 have been repeatedly demonstrated to provide robust prognostic information, evidence for its worth as a predictive marker for chemotherapy benefit is yet to come from randomize clinical trials and therefore its utility is limited to prognostication. Meta-analysis of publicly available microarray based gene expression studies demonstrated that gene expression assays provide similar information and the most important information they provide is the proliferation activity. In untreated population, the prognostic impact of proliferation genes is limited to ER+HER2- subset since HER2+ or ER-HER2- subsets are associated with high proliferation activity. Therefore the clinical utility of these gene expression based tests is mainly for ER+HER2- subset. Since they are usually treated with adjuvant anti-estrogen therapies, for their clinical utility, demonstration of the interaction between the gene expression markers and chemotherapy in anti-estrogen treated cohort in a randomized clinical trial would be required. While OncoytpeDx is the only test supported by studies in a randomized clinical trial for adjuvant chemotherapy, other gene expression based tests are expected to provide similar information. Gene expression profiling assays as more reproducible and precise surrogates for tumor grade (MapQauntDx and Theros Breast Cancer Index) are very promising assays. However, absence of definitive predefined cut-off for defining the subset that benefit from chemotherapy validated in cohorts from randomized trials limit their clinical application.

摘要

背景:目前有五种多基因表达的乳腺癌预后检测方法可作为参考实验室检测,分别是 Mammaprint、MapQuantDx、OncotypeDx、PAM50 乳腺癌内在亚型分类器和 Theros 乳腺癌指数。这些检测方法都声称能够提供比传统预后标志物更具预后意义的信息,并帮助确定哪些患者需要接受系统性治疗。为了评估这些检测方法的临床实用性,我们对相关证据进行了回顾,以确定是否应将其中任何一种检测方法作为常规临床检测。

方法:我们查阅了同行评审出版物、会议摘要以及公司网站上提供的信息,根据以下标准综合了这些检测方法的临床实用性信息:(1)参考实验室检测的分析有效性和监管批准情况。(2)临床实用性的证据水平。(3)已发表的证据是否支持预后和/或预测性结论。

结果:尽管 OncotypeDx 和 Mammaprint 的临床应用证据基于参考实验室检测,其他检测方法的支持证据来自学术检测,然后才转化为参考实验室检测,但两项大型随机临床试验评估 OncotypeDx 和 Mammaprint 临床实用性的结果仍需数年时间。在此之前,这些标志物均无法达到基于标志物实用性分级系统的 I 级证据水平。但是,根据基于标志物实用性分级系统的 Simon 修订版,OncotypeDx 达到了 IB 级证据水平。因此,OncotypeDx 可考虑作为常规临床应用,辅助临床和病理信息,且已被纳入美国临床指南。虽然 Mammaprint、MapQuantDx 和 PAM50 已被反复证明具有可靠的预后信息,但作为化疗获益预测标志物的价值仍有待随机临床试验证实,因此其用途仅限于预后判断。公开的基于微阵列的基因表达研究的荟萃分析表明,基因表达检测提供了相似的信息,它们最重要的信息是增殖活性。在未治疗的人群中,增殖基因的预后影响仅限于 ER+HER2-亚组,因为 HER2+或 ER-HER2-亚组与高增殖活性相关。因此,这些基于基因表达的检测的临床实用性主要针对 ER+HER2-亚组。由于这些亚组通常接受辅助抗雌激素治疗,因此需要在随机临床试验中,在接受抗雌激素治疗的队列中,证明基因表达标志物与化疗之间的相互作用,以评估这些基因表达检测的临床实用性。虽然只有 OncotypeDx 得到了随机临床试验研究的支持,但其他基于基因表达的检测方法预计也会提供相似的信息。作为肿瘤分级更具可重复性和更精确的替代指标的基因表达谱检测(MapQuantDx 和 Theros 乳腺癌指数)具有很大的应用前景。然而,在随机临床试验队列中,没有明确的、经过验证的、用于定义从化疗中获益的亚组的预定临界值,限制了其临床应用。

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[5]
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[6]
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[7]
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[8]
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[9]
Use of formalin-fixed paraffin-embedded samples for gene expression studies in breast cancer patients.

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[10]
The predictive accuracy of PREDICT: a personalized decision-making tool for Southeast Asian women with breast cancer.

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