Centre for Synthetic Biology and Innovation, Department of Bioengineering, Imperial College London, United Kingdom.
J Theor Biol. 2012 Feb 21;295:139-53. doi: 10.1016/j.jtbi.2011.11.017. Epub 2011 Nov 26.
Genetic control of enzyme activity drives metabolic adaptations to environmental changes, and therefore the feedback interaction between gene expression and metabolism is essential to cell fitness. In this paper we develop a new formalism to detect the equilibrium regimes of an unbranched metabolic network under transcriptional feedback from one metabolite. Our results indicate that one-to-all transcriptional feedback can induce a wide range of metabolic phenotypes, including mono-, multistability and oscillatory behavior. The analysis is based on the use of switch-like models for transcriptional control and the exploitation of the time scale separation between metabolic and genetic dynamics. For any combination of activation and repression feedback loops, we derive conditions for the emergence of a specific phenotype in terms of genetic parameters such as enzyme expression rates and regulatory thresholds. We find that metabolic oscillations can emerge under uniform thresholds and, in the case of operon-controlled networks, the analysis reveals how nutrient-induced bistability and oscillations can emerge as a consequence of the transcriptional feedback.
遗传控制酶活性驱动代谢适应环境变化,因此基因表达和代谢之间的反馈相互作用对于细胞适应性至关重要。在本文中,我们开发了一种新的形式来检测分支代谢网络在来自一种代谢物的转录反馈下的平衡状态。我们的结果表明,一对一的转录反馈可以诱导广泛的代谢表型,包括单稳、多稳和振荡行为。该分析基于对转录控制的开关模型的使用以及代谢和遗传动力学之间的时间尺度分离的利用。对于激活和抑制反馈环的任何组合,我们根据遗传参数(例如酶表达率和调节阈值)推导出特定表型出现的条件。我们发现,在均匀阈值下可以出现代谢振荡,并且在操纵子控制的网络的情况下,分析揭示了转录反馈如何导致营养诱导的双稳性和振荡的出现。