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层粘连蛋白家族的进化:内含子能说明什么。

Evolution of the lamin protein family: what introns can tell.

机构信息

Department for Cell Biology, University of Bremen, Bremen, Germany.

出版信息

Nucleus. 2012 Jan-Feb;3(1):44-59. doi: 10.4161/nucl.18927.

Abstract

Lamins are the major components of the nuclear lamina, a filamentous layer found at the interphase between chromatin and the inner nuclear membrane. The lamina supports the nuclear envelope and provides anchorage sites for chromatin. Lamins and their associated proteins are required for most nuclear activities, mitosis, and for linking the nucleoskeleton to the network of cytoskeletal filaments. Mutations in lamins and their associated proteins give rise to a wide range of diseases, collectively called laminopathies. This review focuses on the evolution of the lamin protein family. Evolution from basal metazoans to man will be described on the basis of protein sequence comparisons and analyses of their gene structure. Lamins are the founding members of the family of intermediate filament proteins. How genes encoding cytoplasmic IF proteins could have arisen from the archetypal lamin gene progenitor, can be inferred from a comparison of the respective gene structures. The lamin/IF protein family seems to be restricted to the metazoans. In general, invertebrate genomes harbor only a single lamin gene encoding a B-type lamin. The archetypal lamin gene structure found in basal metazoans is conserved up to the vertebrate lineage. The completely different structure of lamin genes in Caenorhabditis and Drosophila are exceptions rather than the rule within their systematic groups. However, variation in the length of the coiled-coil forming central domain might be more common than previously anticipated. The increase in the number of lamin genes in vertebrates can be explained by two rounds of genome duplication. The origin of lamin A by exon shuffling might explain the processing of prelamin A to the mature non-isoprenylated form of lamin A. By alternative splicing the number of vertebrate lamin proteins has increased even further. Lamin C, an alternative splice form of the LMNA gene, is restricted to mammals. Amphibians and mammals express germline-specific lamins that differ in their protein structure from that of somatic lamins. Evidence is provided that there exist lamin-like proteins outside the metazoan lineage.

摘要

核纤层由核纤层蛋白组成,是位于染色质和核内膜之间的丝状层。核纤层为核膜提供支撑,并为染色质提供附着位点。核纤层蛋白及其相关蛋白对于大多数核活动、有丝分裂以及将核骨架与细胞骨架丝的网络连接都很重要。核纤层蛋白及其相关蛋白的突变会导致广泛的疾病,统称为核纤层病。本综述重点介绍核纤层蛋白家族的进化。将根据蛋白序列比较和基因结构分析,描述从基础后生动物到人进化的过程。核纤层蛋白是中间丝蛋白家族的原始成员。从原始核纤层基因祖先进化而来的编码细胞质 IF 蛋白的基因是如何产生的,可以通过比较各自的基因结构来推断。核纤层/IF 蛋白家族似乎仅限于后生动物。一般来说,无脊椎动物基因组只含有一个编码 B 型核纤层蛋白的核纤层基因。在基础后生动物中发现的原始核纤层基因结构一直保持到脊椎动物谱系。在秀丽隐杆线虫和果蝇中发现的完全不同的核纤层基因结构是它们系统群中的例外,而不是规则。然而,卷曲螺旋形成的中央结构域的长度变化可能比预期的更为常见。脊椎动物中核纤层基因数量的增加可以用两轮基因组复制来解释。前核纤层 A 到成熟非异戊二烯化核纤层 A 的加工可能是通过外显子改组来解释核纤层 A 的起源。通过选择性剪接,脊椎动物的核纤层蛋白数量进一步增加。LMNA 基因的另一种剪接形式核纤层蛋白 C 仅存在于哺乳动物中。两栖动物和哺乳动物表达的生殖细胞特异性核纤层蛋白在蛋白质结构上与体细胞核纤层蛋白不同。有证据表明,在后生动物谱系之外存在核纤层样蛋白。

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