Systems Biology Ireland, University College Dublin, Belfield, Dublin, Ireland.
PLoS Comput Biol. 2011 Dec;7(12):e1002317. doi: 10.1371/journal.pcbi.1002317. Epub 2011 Dec 15.
In an active, self-ubiquitinated state, the Ring1B ligase monoubiquitinates histone H2A playing a critical role in Polycomb-mediated gene silencing. Following ubiquitination by external ligases, Ring1B is targeted for proteosomal degradation. Using biochemical data and computational modeling, we show that the Ring1B ligase can exhibit abrupt switches, overshoot transitions and self-perpetuating oscillations between its distinct ubiquitination and activity states. These different Ring1B states display canonical or multiply branched, atypical polyubiquitin chains and involve association with the Polycomb-group protein Bmi1. Bistable switches and oscillations may lead to all-or-none histone H2A monoubiquitination rates and result in discrete periods of gene (in)activity. Switches, overshoots and oscillations in Ring1B catalytic activity and proteosomal degradation are controlled by the abundances of Bmi1 and Ring1B, and the activities and abundances of external ligases and deubiquitinases, such as E6-AP and USP7.
在活跃的、自我泛素化状态下,Ring1B 连接酶单泛素化组蛋白 H2A,在 Polycomb 介导的基因沉默中发挥关键作用。在外部连接酶泛素化后,Ring1B 被靶向进行蛋白酶体降解。利用生化数据和计算建模,我们表明 Ring1B 连接酶可以在其不同的泛素化和活性状态之间表现出突然的开关、过冲跃迁和自我维持的振荡。这些不同的 Ring1B 状态显示出典型或多分支的、非典型多泛素链,并涉及与 Polycomb 组蛋白 Bmi1 的关联。双稳态开关和振荡可能导致组蛋白 H2A 单泛素化率的全有或全无,并导致基因(不)活性的离散期。Ring1B 催化活性和蛋白酶体降解中的开关、过冲和振荡受 Bmi1 和 Ring1B 的丰度以及外部连接酶和去泛素酶(如 E6-AP 和 USP7)的活性和丰度控制。