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平衡的生化反应:统一化学和生物热力学的新方法。

Balanced biochemical reactions: a new approach to unify chemical and biochemical thermodynamics.

机构信息

Dipartimento di Chimica, Università di Firenze, Sesto Fiorentino, Italy.

出版信息

PLoS One. 2012;7(1):e29529. doi: 10.1371/journal.pone.0029529. Epub 2012 Jan 11.

Abstract

A novel procedure is presented which, by balancing elements and electric charge of biochemical reactions which occur at constant pH and pMg, allows assessing the thermodynamics properties of reaction Δ(r)G'⁰, Δ(r)H'⁰, Δ(r)S'⁰ and the change in binding of hydrogen and magnesium ions of these reactions. This procedure of general applicability avoids the complex calculations required by the use of the Legendre transformed thermodynamic properties of formation Δ(f)G'⁰, Δ(f)H'⁰ and Δ(f)S'⁰ hitherto considered an obligatory prerequisite to deal with the thermodynamics of biochemical reactions. As a consequence, the term "conditional" is proposed in substitution of "Legendre transformed" to indicate these thermodynamics properties. It is also shown that the thermodynamic potential G is fully adequate to give a criterion of spontaneous chemical change for all biochemical reactions and then that the use of the Legendre transformed G' is unnecessary. The procedure proposed can be applied to any biochemical reaction, making possible to re-unify the two worlds of chemical and biochemical thermodynamics, which so far have been treated separately.

摘要

提出了一种新的方法,通过平衡在恒定 pH 和 pMg 下发生的生化反应的元素和电荷,可以评估反应的热力学性质 Δ(r)G'⁰、Δ(r)H'⁰、Δ(r)S'⁰ 以及这些反应中氢和镁离子结合的变化。该方法具有普遍适用性,避免了使用迄今为止被认为是处理生化反应热力学的必要前提的形成热力学性质 Δ(f)G'⁰、Δ(f)H'⁰ 和 Δ(f)S'⁰ 的 Legendre 变换热力学性质所需的复杂计算。因此,提出了用“条件”代替“Legendre 变换”来表示这些热力学性质。还表明,热力学势 G 完全足以作为所有生化反应自发化学变化的判据,因此不需要使用 Legendre 变换的 G'。所提出的方法可应用于任何生化反应,使化学热力学和生化热力学这两个迄今为止分别处理的领域能够重新统一起来。

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