Department of Biological Sciences, University of South Carolina, Columbia, SC 29205, USA.
Mol Phylogenet Evol. 2012 Jun;63(3):617-24. doi: 10.1016/j.ympev.2012.02.003. Epub 2012 Feb 21.
The pattern of amino acid residue replacement in the components of the bursicon signaling system (involving the BURSα/BURSβ heterodimer and its receptor BURSrec) was reconstructed across a phylogeny of 17 insect species, in order to test for the co-occurrence of replacements at sets of individual sites. Sets of three or more branches with perfectly concordant changes occurred to a greater extent than expected by chance, given the observed level of amino acid change. The latter sites (SPC sites) were found to have distinctive characteristics: (1) the mean number of changes was significantly lower at SPC sites than that at other sites with multiple changes; (2) SPC sites had a significantly greater tendency toward parallel amino acid changes than other sites with multiple changes, but no greater tendency toward convergent changes; and (3) parallel changes tended to involve relatively similar amino acids, as indicated by relatively low mean chemical distances. The results implicated functional constraint, permitting only a limited subset of amino acids in a given site, as a major factor in causing both parallel amino acid replacement and coordinated amino acid changes in different sites of the same protein and of interacting proteins in this system.
在 17 种昆虫物种的系统发育中,重建了保幼激素信号系统(涉及 BURSα/BURSβ 异二聚体及其受体 BURSrec)的氨基酸残基替代模式,以检验在个别位点集上的替代是否同时发生。与观察到的氨基酸变化水平相比,具有完全一致变化的三个或更多分支的集合比预期更频繁地发生。这些位点(SPC 位点)具有独特的特征:(1)SPC 位点的平均变化数明显低于具有多个变化的其他位点;(2)SPC 位点的平行氨基酸变化趋势明显大于具有多个变化的其他位点,但没有更大的趋同变化趋势;(3)平行变化往往涉及相对相似的氨基酸,这表明平均化学距离相对较低。研究结果表明,功能约束(允许给定位置的氨基酸数量有限)是导致同一蛋白质不同位置和相互作用蛋白质中平行氨基酸替代和协调氨基酸变化的主要因素。