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嘌呤中锥型交点的可及性研究:次黄嘌呤及其单质子化和去质子化形式。

On the accessibility to conical intersections in purines: hypoxanthine and its singly protonated and deprotonated forms.

机构信息

Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, México, 04510, D.F., México.

出版信息

J Am Chem Soc. 2012 May 9;134(18):7820-9. doi: 10.1021/ja300546x. Epub 2012 Apr 24.

Abstract

The dynamics following electronic excitation of hypoxanthine and its nucleoside inosine were studied by femtosecond fluorescence up-conversion. Our objective was to explore variants of the purinic DNA bases in order to determine the molecular parameters that increase or reduce the accessibility to ground state conical intersections. From experiments in water and methanol solution we conclude that both dominant neutral tautomers of hypoxanthine exhibit ultrashort excited state lifetimes (τ < 0.2 ps), which are significantly shorter than in the related nucleobase guanine. This points to a more accessible conical intersection for the fluorescent state upon removal of the amino group, present in guanine but absent in hypoxanthine. The excited state dynamics of singly protonated hypoxanthine were also studied, showing biexponential decays with a 1.1 ps component (5%) besides a sub-0.2 ps ultrafast component. On the other hand, the S(1) lifetimes of the singly deprotonated forms of hypoxanthine and inosine show drastic differences, where the latter remains ultrafast but the singly deprotonated hypoxanthine shows a much longer lifetime of 19 ps. This significant variation is related to the different deprotonation sites in hypoxanthine versus inosine, which gives rise to significantly different resonance structures. In our study we also include multireference perturbation theory (MRMP2) excited state calculations in order to determine the nature of the initial electronic excitation in our experiments and clarify the ordering of the states in the singlet manifold at the ground state geometry. In addition, we performed multireference configuration interaction calculations (MR-CIS) that identify the presence of low-lying conical intersections for both prominent neutral tautomers of hypoxanthine. In both cases, the surface crossings occur at geometries reached by out of plane opposite motions of C2 and N3. The study of this simpler purine gives several insights into how small structural modifications, including amino substitution and protonation site and state, determine the accessibility to conical intersections in this kind of heterocycles.

摘要

我们通过飞秒荧光上转换研究了次黄嘌呤及其核苷肌苷在电子激发后的动力学。我们的目的是探索嘌呤 DNA 碱基的变体,以确定增加或减少对基态锥形交叉点可及性的分子参数。从水和甲醇溶液中的实验中,我们得出结论,次黄嘌呤的两种主要中性互变异构体都表现出超短的激发态寿命(τ < 0.2 ps),这明显短于相关核碱基鸟嘌呤。这表明在去除氨基后,对于荧光状态,存在于鸟嘌呤中但不存在于次黄嘌呤中的锥形交叉点更容易接近。我们还研究了单质子化次黄嘌呤的激发态动力学,显示出双指数衰减,除了 0.2 ps 以下的超快分量外,还有一个 1.1 ps 的分量。另一方面,单去质子化形式的次黄嘌呤和肌苷的 S(1) 寿命显示出明显的差异,其中后者仍然超快,但单去质子化的次黄嘌呤显示出 19 ps 的更长寿命。这种显著的变化与次黄嘌呤与肌苷中不同的去质子化位点有关,这导致了明显不同的共振结构。在我们的研究中,我们还包括多参考微扰理论(MRMP2)激发态计算,以确定我们实验中初始电子激发的性质,并澄清基态几何形状下单重态中各态的顺序。此外,我们进行了多参考组态相互作用计算(MR-CIS),该计算确定了两种主要的次黄嘌呤中性互变异构体都存在低能锥形交叉点。在这两种情况下,表面交叉发生在通过 C2 和 N3 的平面外相反运动达到的几何形状处。对这种更简单的嘌呤的研究为如何通过包括氨基取代、质子化位点和状态在内的小结构修饰来确定此类杂环中锥形交叉点的可及性提供了一些见解。

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