Department of Developmental Biology, Washington University School of Medicine, 660 South Euclid Avenue, Box 8103, St. Louis, MO 63110, USA.
Biochemistry. 2012 Jul 3;51(26):5320-8. doi: 10.1021/bi300523p. Epub 2012 Jun 20.
Bacterial L-serine dehydratases differ from mammalian L- and D-serine dehydratases and bacterial D-serine dehydratases by the presence of an iron-sulfur center rather than a pyridoxyl phosphate prosthetic group. They exist in two forms, types 1 and 2, distinguished by their sequence and oligomeric configuration. Both types contain an ASB domain, and the type 1 enzymes also contain an ACT domain in a tandem arrangement with the ASB domain like that in type 1 D-3-phosphoglycerate dehydrogenases (PGDHs). This investigation reveals striking kinetic differences between L-serine dehydratases from Bacillus subtilis (bsLSD, type 1) and Legionella pneumophila (lpLSD, type 2). lpLSD is activated by monovalent cations and inhibited by monovalent anions. bsLSD is strongly activated by cations, particularly potassium, and shows a mixed response to anions. Flouride is a competitive inhibitor for lpLSD but an apparent activator for bsLSD at low concentrations and an inhibitor at high concentrations. The reaction products, pyruvate and ammonia, also act as activators but to different extents for each type. Pyruvate activation is competitive with L-serine, but activation of the enzyme is not compatible with it simply competing for binding at the active site and suggests the presence of a second, allosteric site. Because activation can be eliminated by higher levels of L-serine, it may be that this second site is actually a second serine binding site. This is consistent with type 1 PGDH in which the ASB domain functions as a second site for substrate binding and activation.
细菌 L-丝氨酸脱水酶与哺乳动物的 L-和 D-丝氨酸脱水酶以及细菌 D-丝氨酸脱水酶不同,因为前者含有铁硫中心而不是吡哆醛磷酸盐辅基。它们有两种形式,1 型和 2 型,通过序列和寡聚体构型来区分。这两种类型都含有 ASB 结构域,而 1 型酶还在 ASB 结构域的串联排列中含有 ACT 结构域,就像 1 型 D-3-磷酸甘油酸脱氢酶(PGDH)一样。这项研究揭示了枯草芽孢杆菌(bsLSD,1 型)和嗜肺军团菌(lpLSD,2 型)的 L-丝氨酸脱水酶之间惊人的动力学差异。lpLSD 被单价阳离子激活,被单价阴离子抑制。bsLSD 被阳离子强烈激活,特别是钾离子,并对阴离子表现出混合反应。氟化物是 lpLSD 的竞争性抑制剂,但在低浓度下是 bsLSD 的表观激活剂,在高浓度下是抑制剂。反应产物丙酮酸和氨也作为激活剂,但对每种类型的作用程度不同。丙酮酸的激活是竞争性的与 L-丝氨酸,但酶的激活与其简单地竞争结合在活性位点并不兼容,并表明存在第二个变构位点。由于激活可以被更高水平的 L-丝氨酸消除,因此第二个位点实际上可能是第二个丝氨酸结合位点。这与 1 型 PGDH 一致,其中 ASB 结构域作为第二个底物结合和激活位点。