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新月柄杆菌CB15中VIII族脂肪分解酶酯酶A的鉴定、结晶及初步X射线衍射分析

Identification, crystallization and preliminary X-ray diffraction analysis of esterase A from Caulobacter crescentus CB15, a family VIII lipolytic enzyme.

作者信息

Ryu Bum Han, Ngo Tri Duc, Jang Eunjin, Kim Sungsoo, Ju Hansol, Kim Kyeong Kyu, Kim T Doohun

机构信息

Department of Molecular Science and Technology, Graduate School of Interdisciplinary Programs, Ajou University, Suwon 443-749, Republic of Korea.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 May 1;68(Pt 5):560-4. doi: 10.1107/S1744309112009992. Epub 2012 Apr 21.

Abstract

The structures and functions of family VIII lipolytic enzymes, which have moderate sequence identity to class C β-lactamases and penicillin-binding proteins, are largely unknown. Here, the X-ray crystallographic study of a family VIII esterase from Caulobacter crescentus CB15 (CcEstA) is described. Sequence analysis revealed that CcEstA has a conserved serine residue within the S-X-X-K motif which acts as a catalytic nucleophile. Recombinant protein containing an N-terminal His tag was expressed in Escherichia coli and purified to homogeneity. Functional studies showed that CcEstA acts on α- and β-naphthyl acetate as substrates. In addition, it can catalyze the hydrolysis of ketoprofen ethyl ester, a highly useful product in industrial applications. CcEstA was crystallized using a solution consisting of 1.0 M potassium/sodium tartrate, 0.1 M imidazole pH 8.0, 0.2 M NaCl, and X-ray diffraction data were collected to a resolution of 1.62 Å with an R(merge) of 9.4%. The crystals of CcEstA belonged to space group C222(1), with unit-cell parameters a = 172.23, b = 176.68, c = 47.93 Å. Structure determination is in progress.

摘要

VIII族脂解酶的结构和功能在很大程度上尚不清楚,该族酶与C类β-内酰胺酶和青霉素结合蛋白具有中等程度的序列同源性。本文描述了新月柄杆菌CB15(CcEstA)的VIII族酯酶的X射线晶体学研究。序列分析表明,CcEstA在S-X-X-K基序内有一个保守的丝氨酸残基,它作为催化亲核试剂。含有N端His标签的重组蛋白在大肠杆菌中表达并纯化至同质。功能研究表明,CcEstA以α-和β-萘乙酸酯为底物发挥作用。此外,它可以催化酮洛芬乙酯的水解,酮洛芬乙酯是工业应用中一种非常有用的产物。使用由1.0 M酒石酸钾/钠、0.1 M咪唑pH 8.0、0.2 M NaCl组成的溶液使CcEstA结晶,并收集X射线衍射数据至1.62 Å的分辨率,合并R值为9.4%。CcEstA的晶体属于空间群C222(1),晶胞参数a = 172.23,b = 176.68,c = 47.93 Å。结构测定正在进行中。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Characterization, amyloid formation, and immobilization of a novel SGNH hydrolase from Listeria innocua 11262.
Int J Biol Macromol. 2012 Jan 1;50(1):103-11. doi: 10.1016/j.ijbiomac.2011.10.003. Epub 2011 Oct 15.
3
Isolation and characterization of cold-active family VIII esterases from an arctic soil metagenome.
Appl Microbiol Biotechnol. 2011 Apr;90(2):573-81. doi: 10.1007/s00253-011-3132-7. Epub 2011 Feb 12.
4
Molecular cloning and characterization of a novel family VIII alkaline esterase from a compost metagenomic library.
Biochem Biophys Res Commun. 2010 Feb 26;393(1):45-9. doi: 10.1016/j.bbrc.2010.01.070. Epub 2010 Jan 25.
5
Characterization of a novel oligomeric SGNH-arylesterase from Sinorhizobium meliloti 1021.
Int J Biol Macromol. 2010 Mar 1;46(2):145-52. doi: 10.1016/j.ijbiomac.2009.12.010. Epub 2010 Jan 8.
6
Molecular replacement with MOLREP.
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):22-5. doi: 10.1107/S0907444909042589. Epub 2009 Dec 21.
7
Alpha/beta hydrolase fold: an update.
Protein Pept Lett. 2009;16(10):1137-48. doi: 10.2174/092986609789071298.
8
Protein engineering of carboxyl esterases by rational design and directed evolution.
Protein Pept Lett. 2009;16(10):1162-71. doi: 10.2174/092986609789071216.
9
Phaser crystallographic software.
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
10
Structure of the archaeal pab87 peptidase reveals a novel self-compartmentalizing protease family.
PLoS One. 2009;4(3):e4712. doi: 10.1371/journal.pone.0004712. Epub 2009 Mar 5.

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