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群体资源挖掘结核分枝杆菌互作组驱动的药物靶标新范式。

Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis.

机构信息

Council of Scientific and Industrial Research, Delhi, India.

出版信息

PLoS One. 2012;7(7):e39808. doi: 10.1371/journal.pone.0039808. Epub 2012 Jul 11.

DOI:10.1371/journal.pone.0039808
PMID:22808064
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3395720/
Abstract

A decade since the availability of Mycobacterium tuberculosis (Mtb) genome sequence, no promising drug has seen the light of the day. This not only indicates the challenges in discovering new drugs but also suggests a gap in our current understanding of Mtb biology. We attempt to bridge this gap by carrying out extensive re-annotation and constructing a systems level protein interaction map of Mtb with an objective of finding novel drug target candidates. Towards this, we synergized crowd sourcing and social networking methods through an initiative 'Connect to Decode' (C2D) to generate the first and largest manually curated interactome of Mtb termed 'interactome pathway' (IPW), encompassing a total of 1434 proteins connected through 2575 functional relationships. Interactions leading to gene regulation, signal transduction, metabolism, structural complex formation have been catalogued. In the process, we have functionally annotated 87% of the Mtb genome in context of gene products. We further combine IPW with STRING based network to report central proteins, which may be assessed as potential drug targets for development of drugs with least possible side effects. The fact that five of the 17 predicted drug targets are already experimentally validated either genetically or biochemically lends credence to our unique approach.

摘要

结核分枝杆菌(Mtb)基因组序列问世已有十年,但至今仍未出现有前景的药物。这不仅表明了发现新药的挑战,也表明了我们目前对 Mtb 生物学理解的不足。我们试图通过广泛的重新注释和构建 Mtb 的系统水平蛋白质相互作用图谱来弥补这一差距,目的是寻找新的药物靶标候选物。为此,我们通过一项名为“连接解码”(C2D)的计划,将众包和社交网络方法结合起来,生成了第一个也是最大的 Mtb 手动精心制作的相互作用组,称为“相互作用组途径”(IPW),共包含 1434 种通过 2575 种功能关系连接的蛋白质。记录了导致基因调控、信号转导、代谢、结构复合物形成的相互作用。在此过程中,我们根据基因产物对 Mtb 基因组的 87%进行了功能注释。我们进一步将 IPW 与基于 STRING 的网络相结合,报告中心蛋白,这些蛋白可被评估为开发副作用最小的药物的潜在药物靶标。事实上,已经有 17 个预测药物靶标中的 5 个通过遗传或生化实验得到了验证,这也证明了我们独特的方法是可信的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/a4b19aa3e9a7/pone.0039808.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/9ad25f7e8863/pone.0039808.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/f0181b301ca6/pone.0039808.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/d8ea7494ccaa/pone.0039808.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/0446a87476ff/pone.0039808.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/a4b19aa3e9a7/pone.0039808.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/9ad25f7e8863/pone.0039808.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/f0181b301ca6/pone.0039808.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/d8ea7494ccaa/pone.0039808.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/0446a87476ff/pone.0039808.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/31c0/3395720/a4b19aa3e9a7/pone.0039808.g005.jpg

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