Mahidol University, Department of Clinical Microbiology, Faculty of Medical Technology, Bangkok 10700, Thailand.
Expert Opin Drug Discov. 2010 Jul;5(7):633-54. doi: 10.1517/17460441.2010.492827. Epub 2010 May 22.
The past decade had witnessed remarkable advances in computer science which had given rise to many new possibilities including the ability to simulate and model life's phenomena. Among one of the greatest gifts computer science had contributed to drug discovery is the ability to predict the biological activity of compounds and in doing so drives new prospects and possibilities for the development of novel drugs with robust properties.
This review presents an overview of the advances in the computational methods utilized for predicting the biological activity of compounds.
The reader will gain a conceptual view of the quantitative structure-activity relationship paradigm and the methodological overview of commonly used machine learning algorithms.
Great advancements in computational methods have now made it possible to model the biological activity of compounds in an accurate manner. To obtain such a feat, it is often necessary to forgo several data pre-processing and post-processing procedures. A wide range of tools are available to perform such tasks; however, the proper selection and piecing together of complementary components in the prediction workflow remains a challenging and highly subjective task that heavily relies on the experience and judgment of the practitioner.
过去十年见证了计算机科学的显著进步,这带来了许多新的可能性,包括模拟和建模生命现象的能力。计算机科学对药物发现的最大贡献之一是能够预测化合物的生物活性,从而为开发具有稳健特性的新型药物带来新的前景和可能性。
本篇综述介绍了用于预测化合物生物活性的计算方法的进展。
读者将对定量构效关系范式和常用机器学习算法的方法概述有一个概念性的认识。
计算方法的巨大进步使得以准确的方式模拟化合物的生物活性成为可能。要实现这一目标,通常需要放弃几个数据预处理和后处理过程。有各种各样的工具可用于执行此类任务;然而,在预测工作流程中正确选择和组合互补组件仍然是一项具有挑战性和高度主观的任务,这严重依赖于从业者的经验和判断。